SMTL ID : 3pih.1

T. maritima UvrA in complex with fluorescein-modified DNA

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

homo-dimer

Ligands

4 x PPV: PYROPHOSPHATE(Non-covalent)

PPV.1: 8 residues within 4Å: Chain A: E.469, V.618, S.619, G.620, S.621, G.622, K.623, S.624 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:G.620, A:S.621, A:G.622, A:K.623, A:S.624 Salt bridges: A:K.623 PPV.2: 12 residues within 4Å: Chain A: V.32, S.33, G.34, S.35, G.36, K.37, S.38, H.524, S.807, G.808, G.809, G.838 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:S.33, A:G.34, A:G.36, A:K.37, A:S.38, A:S.38, A:S.807, A:G.809 Salt bridges: A:K.37, A:K.37 PPV.6: 8 residues within 4Å: Chain C: E.469, V.618, S.619, G.620, S.621, G.622, K.623, S.624 6 PLIP interactions: 6 interactions with chain C Hydrogen bonds: C:G.620, C:S.621, C:G.622, C:K.623, C:S.624 Salt bridges: C:K.623 PPV.7: 12 residues within 4Å: Chain C: V.32, S.33, G.34, S.35, G.36, K.37, S.38, H.524, S.807, G.808, G.809, G.838 10 PLIP interactions: 10 interactions with chain C Hydrogen bonds: C:S.33, C:G.34, C:G.36, C:K.37, C:S.38, C:S.38, C:S.807, C:G.809 Salt bridges: C:K.37, C:K.37

6 x ZN: ZINC ION(Non-covalent)

ZN.3: 4 residues within 4Å: Chain A: C.716, C.719, C.739, C.742 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.716, A:C.719, A:C.739, A:C.742 ZN.4: 4 residues within 4Å: Chain A: C.276, C.279, C.384, C.387 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.276, A:C.279, A:C.384, A:C.387 ZN.5: 5 residues within 4Å: Chain A: C.120, E.122, C.123, C.252, C.255 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.120, A:C.123, A:C.252, A:C.255 ZN.8: 4 residues within 4Å: Chain C: C.716, C.719, C.739, C.742 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.716, C:C.719, C:C.739, C:C.742 ZN.9: 4 residues within 4Å: Chain C: C.276, C.279, C.384, C.387 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.276, C:C.279, C:C.384, C:C.387 ZN.10: 5 residues within 4Å: Chain C: C.120, E.122, C.123, C.252, C.255 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.120, C:C.123, C:C.252, C:C.255

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jaciuk, M. et al., Structure of UvrA nucleotide excision repair protein in complex with modified DNA. Nat.Struct.Mol.Biol. (2011)

Release Date

2011-01-19

Peptides

UvrABC system protein A: AC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

UvrABC system protein A