SMTL ID : 3pii.1

Crystal structure of Mutant of ht- Alcohol Dehydrogenase with substrate analogue butyramide

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

homo-tetramer

Ligands

8 x ZN: ZINC ION(Non-covalent)

ZN.1: 6 residues within 4Å: Chain A: C.38, H.61, E.62, C.148, R.331 Ligands: BMD.3 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.38, A:H.61, A:E.62, A:C.148 ZN.2: 5 residues within 4Å: Chain A: C.92, G.93, C.95, C.98, C.106 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.92, A:C.95, A:C.98, A:C.106 ZN.5: 5 residues within 4Å: Chain B: C.38, H.61, E.62, C.148, R.331 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.38, B:H.61, B:E.62, B:C.148 ZN.6: 5 residues within 4Å: Chain B: C.92, G.93, C.95, C.98, C.106 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.92, B:C.95, B:C.98, B:C.106 ZN.9: 5 residues within 4Å: Chain C: C.38, H.61, E.62, C.148 Ligands: BMD.11 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.38, C:H.61, C:E.62, C:C.148 ZN.10: 5 residues within 4Å: Chain C: C.92, G.93, C.95, C.98, C.106 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.92, C:C.95, C:C.98, C:C.106 ZN.13: 5 residues within 4Å: Chain D: C.38, H.61, E.62, C.148 Ligands: BMD.15 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:C.38, D:H.61, D:E.62, D:C.148 ZN.14: 5 residues within 4Å: Chain D: C.92, G.93, C.95, C.98, C.106 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:C.92, D:C.95, D:C.98, D:C.106

4 x BMD: BUTYRAMIDE(Non-covalent)

BMD.3: 7 residues within 4Å: Chain A: T.40, H.61, W.87, C.148, L.262, V.286 Ligands: ZN.1 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:W.87, A:W.87, A:L.262, A:V.286 BMD.7: 9 residues within 4Å: Chain B: C.38, T.40, H.61, W.87, C.148, L.262, I.285, V.286 Chain C: L.276 6 PLIP interactions: 5 interactions with chain B, 1 interactions with chain C Hydrophobic interactions: B:W.87, B:W.87, B:L.262, B:I.285, C:L.276 Hydrogen bonds: B:T.40 BMD.11: 10 residues within 4Å: Chain B: L.276 Chain C: C.38, T.40, H.61, W.87, C.148, L.262, I.285, V.286 Ligands: ZN.9 7 PLIP interactions: 6 interactions with chain C, 1 interactions with chain B Hydrophobic interactions: C:T.40, C:W.87, C:W.87, C:L.262, C:I.285, B:L.276 Hydrogen bonds: C:T.40 BMD.15: 9 residues within 4Å: Chain A: L.276 Chain D: C.38, T.40, H.61, W.87, C.148, L.262, V.286 Ligands: ZN.13 4 PLIP interactions: 1 interactions with chain A, 3 interactions with chain D Hydrophobic interactions: A:L.276, D:T.40, D:W.87, D:L.262

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 3 residues within 4Å: Chain A: G.174, G.175, F.176 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.175, A:F.176 SO4.8: 3 residues within 4Å: Chain B: G.174, G.175, F.176 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:G.175, B:F.176 SO4.12: 4 residues within 4Å: Chain C: H.39, G.174, G.175, F.176 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:G.175, C:F.176 Water bridges: C:R.331 Salt bridges: C:H.39 SO4.16: 5 residues within 4Å: Chain D: H.39, G.174, G.175, F.176, T.237 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:G.175, D:F.176 Salt bridges: D:H.39

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dong, M. et al., Crystal Structure of mutant of ht- Alcohol dehydrogenase. To be Published

Release Date

2011-11-09

Peptides

Alcohol dehydrogenase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

C
B

D
D

Alcohol dehydrogenase