SMTL ID : 3pj9.1 (2 other biounits)

Crystal structure of a Nucleoside Diphosphate Kinase from Campylobacter jejuni

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-dimer

Ligands

7 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: K.12, Y.52, R.105, H.118 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.105 Water bridges: A:N.115, A:H.118 Salt bridges: A:K.12, A:H.118 SO4.2: 4 residues within 4Å: Chain A: K.39, V.41, Q.47, F.133 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.47 Salt bridges: A:K.39 SO4.3: 3 residues within 4Å: Chain A: M.91, T.94, R.105 3 PLIP interactions: 3 interactions with chain A Water bridges: A:R.105, A:G.119 Salt bridges: A:R.105 SO4.4: 5 residues within 4Å: Chain A: K.39, F.133, F.134, K.135, N.137 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:K.135, A:N.137 Water bridges: A:K.39, A:K.39 Salt bridges: A:K.39 SO4.5: 4 residues within 4Å: Chain B: K.12, Y.52, R.105, H.118 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:Y.52, B:R.105 Salt bridges: B:K.12, B:H.118 SO4.6: 3 residues within 4Å: Chain B: S.122, L.123, E.124 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:L.123, B:E.124 SO4.7: 4 residues within 4Å: Chain A: R.34, A.36 Chain B: K.40, P.72 5 PLIP interactions: 2 interactions with chain B, 3 interactions with chain A Water bridges: B:K.40, A:R.34 Salt bridges: B:K.40, A:R.34 Hydrogen bonds: A:A.36

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Filippova, E.V. et al., Crystal structure of a Nucleoside Diphosphate Kinase from Campylobacter jejuni. To be Published

Release Date

2010-11-24

Peptides

Nucleoside diphosphate kinase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
D

Nucleoside diphosphate kinase

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