SMTL ID : 3pjx.1

Structure of Pseudomonas fluorescence LapD GGDEF-EAL dual domain, P32

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

9 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 5 residues within 4Å: Chain A: T.221, E.404, L.407, L.422, F.423 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:L.422 EDO.2: 3 residues within 4Å: Chain A: A.87, P.90, Q.93 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:P.90, A:Q.93 EDO.3: 5 residues within 4Å: Chain A: R.206, L.210, R.266, E.269, Q.270 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.269 EDO.4: 4 residues within 4Å: Chain A: V.224, L.225, E.276, S.277 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.276, A:S.277 EDO.5: 8 residues within 4Å: Chain A: T.329, R.333, F.337, S.338, L.339, L.357, G.358, A.360 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:T.329, A:R.333, A:L.339, A:L.339, A:A.360 EDO.6: 4 residues within 4Å: Chain A: S.18, Y.19, R.30, D.377 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.18, A:D.377 EDO.7: 7 residues within 4Å: Chain A: K.57, A.140, A.169, E.170, Q.172, Q.175, N.176 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:K.57, A:A.169, A:Q.172 Water bridges: A:N.176, A:N.176 EDO.8: 4 residues within 4Å: Chain A: V.56, D.58, L.59, A.60 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:V.56, A:D.58, A:L.59, A:A.60 EDO.9: 4 residues within 4Å: Chain A: L.225, H.226, Y.361, Y.416 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:L.225, A:T.311 Water bridges: A:S.277

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Navarro, M.V. et al., Structural Basis for c-di-GMP-Mediated Inside-Out Signaling Controlling Periplasmic Proteolysis. Plos Biol. (2011)

Release Date

2011-02-09

Peptides

Cyclic dimeric GMP binding protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Cyclic dimeric GMP binding protein

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