SMTL ID : 3plx.1

The crystal structure of aspartate alpha-decarboxylase from Campylobacter jejuni subsp. jejuni NCTC 11168

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

hetero-4-4-mer

Ligands

4 x ACT: ACETATE ION(Non-functional Binders)

ACT.1: 9 residues within 4Å: Chain B: X.1, T.33, N.47, G.48, A.49, A.50 Chain F: V.23, R.30, I.61 6 PLIP interactions: 2 interactions with chain F, 4 interactions with chain B Hydrophobic interactions: F:I.61 Salt bridges: F:R.30 Hydrogen bonds: B:T.33, B:T.33, B:A.49, B:A.50 ACT.3: 9 residues within 4Å: Chain D: X.1, T.33, N.47, G.48, A.49, A.50 Chain H: V.23, R.30, I.61 6 PLIP interactions: 4 interactions with chain D, 2 interactions with chain H Hydrogen bonds: D:T.33, D:T.33, D:A.49, D:A.50 Hydrophobic interactions: H:I.61 Salt bridges: H:R.30 ACT.5: 9 residues within 4Å: Chain D: V.23, R.30, I.61 Chain F: X.1, T.33, N.47, G.48, A.49, A.50 6 PLIP interactions: 2 interactions with chain D, 4 interactions with chain F Hydrophobic interactions: D:I.61 Salt bridges: D:R.30 Hydrogen bonds: F:T.33, F:T.33, F:A.49, F:A.50 ACT.7: 9 residues within 4Å: Chain B: V.23, R.30, I.61 Chain H: X.1, T.33, N.47, G.48, A.49, A.50 6 PLIP interactions: 4 interactions with chain H, 2 interactions with chain B Hydrogen bonds: H:T.33, H:T.33, H:A.49, H:A.50 Hydrophobic interactions: B:I.61 Salt bridges: B:R.30

4 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.2: 6 residues within 4Å: Chain A: T.19 Chain B: E.41, G.42, V.43, E.85, N.86 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:E.40, B:E.40 Water bridges: B:E.85 PEG.4: 6 residues within 4Å: Chain C: T.19 Chain D: E.41, G.42, V.43, E.85, N.86 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:E.40, D:E.40 Water bridges: D:E.85 PEG.6: 6 residues within 4Å: Chain E: T.19 Chain F: E.41, G.42, V.43, E.85, N.86 3 PLIP interactions: 3 interactions with chain F Hydrogen bonds: F:E.40, F:E.40 Water bridges: F:E.85 PEG.8: 6 residues within 4Å: Chain G: T.19 Chain H: E.41, G.42, V.43, E.85, N.86 3 PLIP interactions: 3 interactions with chain H Hydrogen bonds: H:E.40, H:E.40 Water bridges: H:E.85

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tan, K. et al., The crystal structure of aspartate alpha-decarboxylase from Campylobacter jejuni subsp. jejuni NCTC 11168. To be Published

Release Date

2010-12-08

Peptides

Aspartate 1-decarboxylase: ACEG
Aspartate 1-decarboxylase: BDFH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

E
A

G
A

B
B

D
B

F
B

H
B

Aspartate 1-decarboxylase

Aspartate 1-decarboxylase