SMTL ID : 3pm6.1

Crystal structure of a putative fructose-1,6-biphosphate aldolase from Coccidioides immitis solved by combined SAD MR

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-dimer

Ligands

33 x IOD: IODIDE ION(Non-functional Binders)

IOD.1: 3 residues within 4Å: Chain A: P.60, Q.93, D.94 Ligand excluded by PLIP IOD.2: 2 residues within 4Å: Chain A: I.97, R.100 Ligand excluded by PLIP IOD.3: 2 residues within 4Å: Chain A: D.67, R.100 Ligand excluded by PLIP IOD.4: 3 residues within 4Å: Chain A: K.99, E.135 Ligands: IOD.5 Ligand excluded by PLIP IOD.5: 3 residues within 4Å: Chain A: E.135, L.136 Ligands: IOD.4 Ligand excluded by PLIP IOD.6: 3 residues within 4Å: Chain A: P.174, R.210, R.213 Ligand excluded by PLIP IOD.7: 2 residues within 4Å: Chain A: E.209, R.243 Ligand excluded by PLIP IOD.8: 2 residues within 4Å: Chain A: L.206, Y.208 Ligand excluded by PLIP IOD.9: 3 residues within 4Å: Chain A: N.198, Y.199, P.231 Ligand excluded by PLIP IOD.10: 1 residues within 4Å: Chain A: D.230 Ligand excluded by PLIP IOD.11: 2 residues within 4Å: Chain A: K.234, D.291 Ligand excluded by PLIP IOD.12: 1 residues within 4Å: Chain A: K.265 Ligand excluded by PLIP IOD.13: 2 residues within 4Å: Chain A: H.25, K.298 Ligand excluded by PLIP IOD.14: 1 residues within 4Å: Chain A: P.17 Ligand excluded by PLIP IOD.15: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP IOD.16: 2 residues within 4Å: Chain A: R.153, E.168 Ligand excluded by PLIP IOD.18: 2 residues within 4Å: Chain B: P.17, M.302 Ligand excluded by PLIP IOD.19: 2 residues within 4Å: Chain B: F.21, T.24 Ligand excluded by PLIP IOD.20: 2 residues within 4Å: Chain B: R.51, E.300 Ligand excluded by PLIP IOD.21: 3 residues within 4Å: Chain B: F.59, W.61, Q.64 Ligand excluded by PLIP IOD.22: 3 residues within 4Å: Chain B: P.60, Q.93, D.94 Ligand excluded by PLIP IOD.23: 2 residues within 4Å: Chain B: S.68, R.100 Ligand excluded by PLIP IOD.24: 2 residues within 4Å: Chain B: E.96, K.99 Ligand excluded by PLIP IOD.25: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP IOD.26: 3 residues within 4Å: Chain A: I.271 Chain B: N.255, N.256 Ligand excluded by PLIP IOD.27: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP IOD.28: 2 residues within 4Å: Chain B: A.142, R.143 Ligand excluded by PLIP IOD.29: 1 residues within 4Å: Chain B: H.25 Ligand excluded by PLIP IOD.30: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP IOD.31: 2 residues within 4Å: Chain B: D.291, M.292 Ligand excluded by PLIP IOD.32: 2 residues within 4Å: Chain B: K.298, F.301 Ligand excluded by PLIP IOD.33: 2 residues within 4Å: Chain B: I.97, R.100 Ligand excluded by PLIP IOD.34: 2 residues within 4Å: Chain B: K.99, L.136 Ligand excluded by PLIP

2 x ZN: ZINC ION(Non-covalent)

ZN.17: 3 residues within 4Å: Chain A: H.91, H.196, H.227 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.91, A:H.196, A:H.227 ZN.35: 2 residues within 4Å: Chain B: H.91, H.227 5 PLIP interactions: 2 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:H.91, B:H.227, H2O.10, H2O.10, H2O.10

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Abendroth, J. et al., SAD phasing using iodide ions in a high-throughput structural genomics environment. J Struct Funct Genomics (2011)

Release Date

2010-12-15

Peptides

Putative fructose-bisphosphate aldolase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Putative fructose-bisphosphate aldolase