SMTL ID : 3pmr.1

Crystal Structure of E2 domain of Human Amyloid Precursor-Like Protein 1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.11 Å

Oligo State

homo-dimer

Ligands

4 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 3 residues within 4Å: Chain A: K.142, R.145, R.149 6 PLIP interactions: 6 interactions with chain A Water bridges: A:R.145, A:R.149, A:R.149 Salt bridges: A:K.142, A:R.145, A:R.149 PO4.2: 5 residues within 4Å: Chain A: E.38, R.89 Chain B: R.149, Q.152, H.153 9 PLIP interactions: 5 interactions with chain A, 4 interactions with chain B Hydrogen bonds: A:E.38, B:Q.152, B:Q.152 Water bridges: A:K.34, A:R.89, B:H.153 Salt bridges: A:K.34, A:R.89, B:H.153 PO4.3: 5 residues within 4Å: Chain A: R.149, Q.152, H.153 Chain B: E.38, R.89 10 PLIP interactions: 7 interactions with chain B, 3 interactions with chain A Water bridges: B:K.34, B:K.34, B:E.38, B:R.89, B:R.89, A:Q.152 Salt bridges: B:K.34, B:R.89, A:H.153 Hydrogen bonds: A:Q.152 PO4.4: 3 residues within 4Å: Chain B: K.142, R.145, R.149 6 PLIP interactions: 6 interactions with chain B Water bridges: B:R.145, B:R.149, B:R.149 Salt bridges: B:K.142, B:R.145, B:R.149

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lee, S. et al., The E2 Domains of APP and APLP1 Share a Conserved Mode of Dimerization. Biochemistry (2011)

Release Date

2011-06-01

Peptides

Amyloid-like protein 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Amyloid-like protein 1