SMTL ID : 3pn1.1

Novel Bacterial NAD+-dependent DNA Ligase Inhibitors with Broad Spectrum Potency and Antibacterial Efficacy In Vivo

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x IVH: 2-(butylsulfanyl)adenosine(Non-covalent)

IVH.1: 14 residues within 4Å: Chain A: L.80, S.81, L.82, E.114, P.115, K.116, L.117, A.121, R.137, E.174, Y.226, V.289, K.291, P.308 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:L.82, A:P.308 Hydrogen bonds: A:L.82, A:E.114, A:P.115, A:K.116, A:L.117, A:E.174, A:K.291 pi-Stacking: A:Y.226

1 x IWH: 1-(2,4-dimethylbenzyl)-6-oxo-1,6-dihydropyridine-3-carboxamide(Non-covalent)

IWH.2: 8 residues within 4Å: Chain A: Y.18, Y.22, H.23, P.28, V.30, P.31, D.32, Y.35 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:Y.22, A:D.32, A:Y.35, A:Y.35 Hydrogen bonds: A:Y.18 Water bridges: A:V.30 pi-Stacking: A:Y.22, A:Y.35

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mills, S.D. et al., Novel Bacterial NAD+-Dependent DNA Ligase Inhibitors with Broad-Spectrum Activity and Antibacterial Efficacy In Vivo. Antimicrob.Agents Chemother. (2011)

Release Date

2011-01-12

Peptides

DNA ligase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

DNA ligase