SMTL ID : 3pnd.2 (1 other biounit)

FAD binding by ApbE protein from Salmonella enterica: a new class of FAD binding proteins

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.75 Å

Oligo State

homo-dimer

Ligands

19 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: K.60, N.61, D.62 Ligand excluded by PLIP SO4.2: 2 residues within 4Å: Chain A: S.80, E.81 Ligand excluded by PLIP SO4.3: 5 residues within 4Å: Chain A: Y.170, D.173, R.177, T.274, L.276 Ligand excluded by PLIP SO4.4: 3 residues within 4Å: Chain A: F.114, R.248, H.251 Ligand excluded by PLIP SO4.5: 6 residues within 4Å: Chain A: R.198, G.199, N.228 Chain B: R.198, G.199, N.228 Ligand excluded by PLIP SO4.6: 4 residues within 4Å: Chain A: G.236, S.237, R.248 Ligands: SO4.12 Ligand excluded by PLIP SO4.7: 5 residues within 4Å: Chain A: H.263, N.264, L.265, G.289, T.290 Ligand excluded by PLIP SO4.8: 4 residues within 4Å: Chain A: P.107, N.110, K.135, Y.160 Ligand excluded by PLIP SO4.10: 3 residues within 4Å: Chain A: T.7, T.8, T.9 Ligand excluded by PLIP SO4.11: 1 residues within 4Å: Chain A: R.217 Ligand excluded by PLIP SO4.12: 6 residues within 4Å: Chain A: R.248, S.250, H.251, V.252 Ligands: SO4.6, FAD.9 Ligand excluded by PLIP SO4.13: 3 residues within 4Å: Chain B: S.80, E.81, Q.150 Ligand excluded by PLIP SO4.14: 3 residues within 4Å: Chain B: R.146, A.147, H.149 Ligand excluded by PLIP SO4.15: 3 residues within 4Å: Chain B: G.236, R.248 Ligands: FAD.18 Ligand excluded by PLIP SO4.16: 5 residues within 4Å: Chain B: H.263, N.264, L.265, G.289, T.290 Ligand excluded by PLIP SO4.17: 4 residues within 4Å: Chain B: Q.212, S.237, Y.238, R.239 Ligand excluded by PLIP SO4.19: 3 residues within 4Å: Chain B: S.71, R.72, S.73 Ligand excluded by PLIP SO4.20: 2 residues within 4Å: Chain B: Q.139, H.140 Ligand excluded by PLIP SO4.21: 2 residues within 4Å: Chain B: Q.205, R.208 Ligand excluded by PLIP

2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.9: 25 residues within 4Å: Chain A: M.22, G.23, T.24, D.53, L.56, S.57, Y.59, A.100, M.101, D.102, V.105, V.109, F.114, D.162, S.164, T.165, G.167, E.168, R.248, H.251, V.252, I.253, T.283, V.287 Ligands: SO4.12 18 PLIP interactions: 18 interactions with chain A Hydrophobic interactions: A:M.22, A:L.56 Hydrogen bonds: A:M.22, A:T.24, A:T.24, A:A.100, A:D.102, A:S.164, A:E.168, A:R.248, A:I.253 Water bridges: A:S.57, A:F.114, A:D.162, A:D.162, A:S.164, A:E.168 pi-Stacking: A:Y.59 FAD.18: 24 residues within 4Å: Chain B: M.22, G.23, T.24, D.53, L.56, S.57, Y.59, A.100, M.101, D.102, V.105, V.109, F.114, D.162, S.164, T.165, G.167, E.168, R.248, H.251, V.252, I.253, V.287 Ligands: SO4.15 15 PLIP interactions: 15 interactions with chain B Hydrophobic interactions: B:M.22, B:L.56 Hydrogen bonds: B:G.23, B:A.100, B:D.102, B:S.164, B:E.168, B:I.253 Water bridges: B:S.57, B:S.164, B:E.168, B:R.248, B:R.248 Salt bridges: B:R.248 pi-Stacking: B:Y.59

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Boyd, J.M. et al., FAD binding by ApbE protein from Salmonella enterica: a new class of FAD-binding proteins. J.Bacteriol. (2011)

Release Date

2011-01-05

Peptides

Thiamine biosynthesis lipoprotein ApbE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

Thiamine biosynthesis lipoprotein ApbE

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