SMTL ID : 3pnn.1

The crystal structure of a glycosyltransferase from Porphyromonas gingivalis W83

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

6 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 6 residues within 4Å: Chain A: D.26, I.28, I.35, D.124, V.276 Ligands: GOL.3 3 PLIP interactions: 3 interactions with chain A Water bridges: A:D.124, A:D.124, A:D.124 GOL.2: 4 residues within 4Å: Chain A: G.14, K.23, R.56, P.100 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.23, A:K.23, A:R.56, A:R.56 GOL.3: 6 residues within 4Å: Chain A: D.124, D.125, W.273, V.276 Ligands: GOL.1, GOL.4 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.124 Water bridges: A:T.277 GOL.4: 7 residues within 4Å: Chain A: N.122, D.125, S.167, R.168, M.215, N.216 Ligands: GOL.3 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.122, A:D.125, A:S.167, A:R.168 GOL.5: 5 residues within 4Å: Chain A: G.27, I.28, G.29, R.282, V.286 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.29, A:R.282, A:R.282 GOL.6: 2 residues within 4Å: Chain A: Q.146, R.261 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.148, A:E.148 Water bridges: A:Q.146

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tan, K. et al., The crystal structure of a glycosyltransferase from Porphyromonas gingivalis W83. To be Published

Release Date

2010-12-15

Peptides

Conserved domain protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Conserved domain protein