- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.60 Å
- Oligo State
- homo-trimer
- Ligands
- 11 x GOL: GLYCEROL(Non-functional Binders)
- 6 x ZN: ZINC ION(Non-covalent)
ZN.3: 6 residues within 4Å:- Chain A: H.22, H.24, K.154, D.272
- Ligands: ZN.4, PO4.5
3 PLIP interactions:3 interactions with chain A- Metal complexes: A:H.22, A:H.24, A:D.272
ZN.4: 6 residues within 4Å:- Chain A: N.96, K.154, H.187, H.215
- Ligands: ZN.3, PO4.5
2 PLIP interactions:2 interactions with chain A- Metal complexes: A:H.187, A:H.215
ZN.14: 6 residues within 4Å:- Chain B: H.22, H.24, K.154, D.272
- Ligands: ZN.15, PO4.16
3 PLIP interactions:3 interactions with chain B- Metal complexes: B:H.22, B:H.24, B:D.272
ZN.15: 7 residues within 4Å:- Chain B: H.22, N.96, K.154, H.187, H.215
- Ligands: ZN.14, PO4.16
2 PLIP interactions:2 interactions with chain B- Metal complexes: B:H.187, B:H.215
ZN.23: 6 residues within 4Å:- Chain C: H.22, H.24, K.154, D.272
- Ligands: ZN.24, PO4.25
3 PLIP interactions:3 interactions with chain C- Metal complexes: C:H.22, C:H.24, C:D.272
ZN.24: 7 residues within 4Å:- Chain C: H.22, N.96, K.154, H.187, H.215
- Ligands: ZN.23, PO4.25
2 PLIP interactions:2 interactions with chain C- Metal complexes: C:H.187, C:H.215
- 10 x PO4: PHOSPHATE ION(Non-functional Binders)
PO4.5: 11 residues within 4Å:- Chain A: H.22, H.24, Y.71, N.96, K.97, K.154, H.187, H.215, D.272
- Ligands: ZN.3, ZN.4
8 PLIP interactions:8 interactions with chain A- Hydrogen bonds: A:N.96
- Water bridges: A:Y.71, A:Y.71, A:D.272
- Salt bridges: A:H.24, A:K.97, A:H.187, A:H.215
PO4.6: 5 residues within 4Å:- Chain A: K.242, K.244, Y.245, R.275, Y.278
10 PLIP interactions:10 interactions with chain A- Hydrogen bonds: A:Y.245, A:Y.278, A:Y.278
- Water bridges: A:Y.245, A:D.272, A:R.275, A:R.275
- Salt bridges: A:K.242, A:K.244, A:R.275
PO4.7: 3 residues within 4Å:- Chain A: T.127, T.128, K.168
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:T.128, A:T.128, A:T.128
- Water bridges: A:D.129, A:K.168
PO4.16: 11 residues within 4Å:- Chain B: H.22, H.24, Y.71, N.96, K.97, K.154, H.187, H.215, D.272
- Ligands: ZN.14, ZN.15
11 PLIP interactions:11 interactions with chain B- Hydrogen bonds: B:H.22, B:N.96, B:N.96
- Water bridges: B:Y.71, B:K.97, B:K.97, B:D.272
- Salt bridges: B:H.24, B:K.97, B:H.187, B:H.215
PO4.17: 5 residues within 4Å:- Chain B: K.242, K.244, Y.245, R.275, Y.278
10 PLIP interactions:10 interactions with chain B- Hydrogen bonds: B:Y.245, B:Y.278
- Water bridges: B:Y.245, B:D.272, B:D.272, B:R.275, B:R.275
- Salt bridges: B:K.242, B:K.244, B:R.275
PO4.18: 2 residues within 4Å:- Chain B: T.127, T.128
6 PLIP interactions:6 interactions with chain B- Hydrogen bonds: B:T.128, B:T.128
- Water bridges: B:T.126, B:D.129, B:K.168
- Salt bridges: B:K.168
PO4.19: 6 residues within 4Å:- Chain B: Y.8, S.82, K.83, G.86, I.87, Q.88
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:G.86
- Water bridges: B:I.89
PO4.25: 11 residues within 4Å:- Chain C: H.22, H.24, Y.71, N.96, K.97, K.154, H.187, H.215, D.272
- Ligands: ZN.23, ZN.24
7 PLIP interactions:7 interactions with chain C- Hydrogen bonds: C:N.96
- Water bridges: C:Y.71, C:K.97
- Salt bridges: C:H.24, C:K.97, C:H.187, C:H.215
PO4.26: 5 residues within 4Å:- Chain C: K.242, K.244, Y.245, R.275, Y.278
11 PLIP interactions:11 interactions with chain C- Hydrogen bonds: C:Y.278
- Water bridges: C:R.218, C:R.218, C:K.242, C:K.242, C:Y.245, C:Y.245, C:R.275
- Salt bridges: C:K.242, C:K.244, C:R.275
PO4.27: 3 residues within 4Å:- Chain C: T.127, T.128, K.168
6 PLIP interactions:6 interactions with chain C- Hydrogen bonds: C:T.128, C:T.128, C:T.128
- Water bridges: C:T.128, C:T.128, C:K.168
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Fedorov, A.A. et al., Crystal structure of the lactonase Lmo2620 from Listeria monocytogenes. To be Published
- Release Date
- 2011-11-23
- Peptides
- Phosphotriesterase family protein: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
CC
F
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.60 Å
- Oligo State
- homo-trimer
- Ligands
- 11 x GOL: GLYCEROL(Non-functional Binders)
- 6 x ZN: ZINC ION(Non-covalent)
- 10 x PO4: PHOSPHATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Fedorov, A.A. et al., Crystal structure of the lactonase Lmo2620 from Listeria monocytogenes. To be Published
- Release Date
- 2011-11-23
- Peptides
- Phosphotriesterase family protein: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
CC
F