SMTL ID : 3pov.1

Crystal structure of a SOX-DNA complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

monomer

Ligands

2 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 5 residues within 4Å: Chain A: E.186, D.223, E.246, I.247, K.248 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.223, A:E.246, A:I.247 MG.2: 5 residues within 4Å: Chain A: E.186, K.248, C.249 Chain B: G.1, G.2 No protein-ligand interaction detected (PLIP)

1 x FMT: FORMIC ACID(Non-functional Binders)

FMT.3: 5 residues within 4Å: Chain A: S.146, S.147, F.209, V.220, S.221 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.147, A:S.147, A:S.221

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bagneris, C. et al., Crystal structure of a KSHV-SOX-DNA complex: insights into the molecular mechanisms underlying DNase activity and host shutoff. Nucleic Acids Res. (2011)

Release Date

2011-09-21

Peptides

ORF 37: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

ORF 37