SMTL ID : 3pp2.1

Crystal structure of the pleckstrin homology domain of ArhGAP27

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.42 Å

Oligo State

homo-tetramer

Ligands

10 x CIT: CITRIC ACID(Non-functional Binders)

CIT.1: 3 residues within 4Å: Chain A: G.23, K.24, R.25 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:R.25 Hydrogen bonds: A:G.23, A:R.25 CIT.2: 5 residues within 4Å: Chain A: K.29, W.31, S.85, S.86, R.87 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:K.29 Hydrogen bonds: A:W.31, A:W.31, A:S.86, A:S.86, A:S.86 Salt bridges: A:K.29, A:R.87 CIT.3: 3 residues within 4Å: Chain A: R.27, K.28, H.30 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:H.30, A:H.30 CIT.18: 5 residues within 4Å: Chain B: K.29, W.31, S.85, S.86, R.87 7 PLIP interactions: 7 interactions with chain B Hydrophobic interactions: B:R.87 Hydrogen bonds: B:S.86, B:S.86, B:S.86, B:S.86 Salt bridges: B:K.29, B:R.87 CIT.19: 3 residues within 4Å: Chain B: E.67, Y.68, T.69 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:T.69 Salt bridges: B:K.22 CIT.33: 3 residues within 4Å: Chain C: G.23, K.24, R.25 3 PLIP interactions: 3 interactions with chain C Hydrophobic interactions: C:R.25 Hydrogen bonds: C:G.23, C:R.25 CIT.34: 5 residues within 4Å: Chain C: K.29, W.31, S.85, S.86, R.87 8 PLIP interactions: 8 interactions with chain C Hydrophobic interactions: C:K.29 Hydrogen bonds: C:W.31, C:W.31, C:S.86, C:S.86, C:S.86 Salt bridges: C:K.29, C:R.87 CIT.35: 3 residues within 4Å: Chain C: R.27, K.28, H.30 2 PLIP interactions: 2 interactions with chain C Salt bridges: C:H.30, C:H.30 CIT.50: 5 residues within 4Å: Chain D: K.29, W.31, S.85, S.86, R.87 7 PLIP interactions: 7 interactions with chain D Hydrophobic interactions: D:R.87 Hydrogen bonds: D:S.86, D:S.86, D:S.86, D:S.86 Salt bridges: D:K.29, D:R.87 CIT.51: 3 residues within 4Å: Chain D: E.67, Y.68, T.69 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:T.69 Salt bridges: D:K.22

50 x UNX: UNKNOWN ATOM OR ION(Non-functional Binders)

UNX.4: 3 residues within 4Å: Chain A: K.88, N.89 Chain B: Q.120 Ligand excluded by PLIP UNX.5: 4 residues within 4Å: Chain A: K.82, S.85, S.86, R.87 Ligand excluded by PLIP UNX.6: 3 residues within 4Å: Chain A: Q.59 Chain D: V.37 Ligands: UNX.60 Ligand excluded by PLIP UNX.7: 2 residues within 4Å: Chain A: K.10 Chain D: H.105 Ligand excluded by PLIP UNX.8: 3 residues within 4Å: Chain A: S.32, A.33, D.48 Ligand excluded by PLIP UNX.9: 4 residues within 4Å: Chain A: L.77, S.78, H.115 Ligands: UNX.11 Ligand excluded by PLIP UNX.10: 2 residues within 4Å: Chain A: S.78 Ligands: UNX.11 Ligand excluded by PLIP UNX.11: 5 residues within 4Å: Chain A: S.78, W.79 Chain B: Q.123 Ligands: UNX.9, UNX.10 Ligand excluded by PLIP UNX.12: 7 residues within 4Å: Chain A: D.106, S.107, E.108 Chain C: D.106, S.107, E.108 Ligands: UNX.44 Ligand excluded by PLIP UNX.13: 4 residues within 4Å: Chain A: V.37, E.39, V.42, T.44 Ligand excluded by PLIP UNX.14: 2 residues within 4Å: Chain A: E.67, Y.68 Ligand excluded by PLIP UNX.15: 2 residues within 4Å: Chain A: S.61, S.64 Ligand excluded by PLIP UNX.20: 2 residues within 4Å: Chain B: K.24, R.25 Ligand excluded by PLIP UNX.21: 4 residues within 4Å: Chain B: G.12, V.13 Chain C: A.11 Ligands: GOL.16 Ligand excluded by PLIP UNX.22: 4 residues within 4Å: Chain B: R.87, K.88, N.89, V.90 Ligand excluded by PLIP UNX.23: 4 residues within 4Å: Chain B: K.10 Chain C: H.105 Ligands: GOL.16, GOL.17 Ligand excluded by PLIP UNX.24: 3 residues within 4Å: Chain A: A.119 Chain B: S.78, W.79 Ligand excluded by PLIP UNX.25: 2 residues within 4Å: Chain B: D.106, S.107 Ligand excluded by PLIP UNX.26: 3 residues within 4Å: Chain C: H.15, K.50 Ligands: UNX.31 Ligand excluded by PLIP UNX.27: 3 residues within 4Å: Chain B: T.69, V.70, E.71 Ligand excluded by PLIP UNX.28: 2 residues within 4Å: Chain B: P.66 Ligands: UNX.38 Ligand excluded by PLIP UNX.29: 4 residues within 4Å: Chain B: S.61, K.62, F.63, S.64 Ligand excluded by PLIP UNX.30: 4 residues within 4Å: Chain B: I.110 Chain C: G.12, W.114 Ligands: GOL.16 Ligand excluded by PLIP UNX.31: 2 residues within 4Å: Chain B: D.9 Ligands: UNX.26 Ligand excluded by PLIP UNX.32: 3 residues within 4Å: Chain B: K.47, T.65, P.66 Ligand excluded by PLIP UNX.36: 3 residues within 4Å: Chain C: K.88, N.89 Chain D: Q.120 Ligand excluded by PLIP UNX.37: 4 residues within 4Å: Chain C: K.82, S.85, S.86, R.87 Ligand excluded by PLIP UNX.38: 3 residues within 4Å: Chain B: V.37 Chain C: Q.59 Ligands: UNX.28 Ligand excluded by PLIP UNX.39: 2 residues within 4Å: Chain B: H.105 Chain C: K.10 Ligand excluded by PLIP UNX.40: 3 residues within 4Å: Chain C: S.32, A.33, D.48 Ligand excluded by PLIP UNX.41: 4 residues within 4Å: Chain C: L.77, S.78, H.115 Ligands: UNX.43 Ligand excluded by PLIP UNX.42: 2 residues within 4Å: Chain C: S.78 Ligands: UNX.43 Ligand excluded by PLIP UNX.43: 5 residues within 4Å: Chain C: S.78, W.79 Chain D: Q.123 Ligands: UNX.41, UNX.42 Ligand excluded by PLIP UNX.44: 7 residues within 4Å: Chain A: D.106, S.107, E.108 Chain C: D.106, S.107, E.108 Ligands: UNX.12 Ligand excluded by PLIP UNX.45: 4 residues within 4Å: Chain C: V.37, E.39, V.42, T.44 Ligand excluded by PLIP UNX.46: 2 residues within 4Å: Chain C: E.67, Y.68 Ligand excluded by PLIP UNX.47: 2 residues within 4Å: Chain C: S.61, S.64 Ligand excluded by PLIP UNX.52: 2 residues within 4Å: Chain D: K.24, R.25 Ligand excluded by PLIP UNX.53: 4 residues within 4Å: Chain A: A.11 Chain D: G.12, V.13 Ligands: GOL.48 Ligand excluded by PLIP UNX.54: 4 residues within 4Å: Chain D: R.87, K.88, N.89, V.90 Ligand excluded by PLIP UNX.55: 4 residues within 4Å: Chain A: H.105 Chain D: K.10 Ligands: GOL.48, GOL.49 Ligand excluded by PLIP UNX.56: 3 residues within 4Å: Chain C: A.119 Chain D: S.78, W.79 Ligand excluded by PLIP UNX.57: 2 residues within 4Å: Chain D: D.106, S.107 Ligand excluded by PLIP UNX.58: 3 residues within 4Å: Chain A: H.15, K.50 Ligands: UNX.63 Ligand excluded by PLIP UNX.59: 3 residues within 4Å: Chain D: T.69, V.70, E.71 Ligand excluded by PLIP UNX.60: 2 residues within 4Å: Chain D: P.66 Ligands: UNX.6 Ligand excluded by PLIP UNX.61: 4 residues within 4Å: Chain D: S.61, K.62, F.63, S.64 Ligand excluded by PLIP UNX.62: 4 residues within 4Å: Chain A: G.12, W.114 Chain D: I.110 Ligands: GOL.48 Ligand excluded by PLIP UNX.63: 2 residues within 4Å: Chain D: D.9 Ligands: UNX.58 Ligand excluded by PLIP UNX.64: 3 residues within 4Å: Chain D: K.47, T.65, P.66 Ligand excluded by PLIP

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.16: 10 residues within 4Å: Chain B: A.11, G.12, I.110, W.114 Chain C: G.12, V.13, H.105 Ligands: UNX.21, UNX.23, UNX.30 2 PLIP interactions: 1 interactions with chain C, 1 interactions with chain B Hydrogen bonds: C:V.13, B:A.11 GOL.17: 7 residues within 4Å: Chain A: E.108 Chain B: K.10, T.113, K.116 Chain C: H.105, D.106 Ligands: UNX.23 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:K.10, B:T.113, A:E.108 GOL.48: 10 residues within 4Å: Chain A: G.12, V.13, H.105 Chain D: A.11, G.12, I.110, W.114 Ligands: UNX.53, UNX.55, UNX.62 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain D Hydrogen bonds: A:V.13, D:A.11 GOL.49: 7 residues within 4Å: Chain A: H.105, D.106 Chain C: E.108 Chain D: K.10, T.113, K.116 Ligands: UNX.55 3 PLIP interactions: 1 interactions with chain C, 1 interactions with chain A, 1 interactions with chain D Hydrogen bonds: C:E.108, A:D.106, D:K.10

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shen, L. et al., Crystal structure of the pleckstrin homology domain of ArhGAP27. to be published

Release Date

2010-12-08

Peptides

Rho GTPase-activating protein 27: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Rho GTPase-activating protein 27