SMTL ID : 3ppa.1

Structure of the Dusp-Ubl domains of Usp15

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.35 Å

Oligo State

homo-tetramer

Ligands

12 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 2 residues within 4Å: Chain A: Y.197, M.198 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:M.198 SO4.2: 5 residues within 4Å: Chain A: V.143, E.144, V.145, Y.146, K.168 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:V.145, A:Y.146, A:Y.146 Salt bridges: A:K.168 SO4.3: 4 residues within 4Å: Chain A: E.149, T.163, R.164, R.165 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.149, A:R.165 SO4.5: 2 residues within 4Å: Chain B: Y.197, M.198 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:M.198 SO4.6: 5 residues within 4Å: Chain B: V.143, E.144, V.145, Y.146, K.168 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:V.145, B:Y.146, B:Y.146 Salt bridges: B:K.168 SO4.7: 4 residues within 4Å: Chain B: E.149, T.163, R.164, R.165 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:E.149, B:R.165 SO4.9: 2 residues within 4Å: Chain C: Y.197, M.198 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:M.198 SO4.10: 5 residues within 4Å: Chain C: V.143, E.144, V.145, Y.146, K.168 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:V.145, C:Y.146, C:Y.146 Salt bridges: C:K.168 SO4.11: 4 residues within 4Å: Chain C: E.149, T.163, R.164, R.165 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:E.149, C:E.149, C:R.165 SO4.13: 2 residues within 4Å: Chain D: Y.197, M.198 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:M.198 SO4.14: 5 residues within 4Å: Chain D: V.143, E.144, V.145, Y.146, K.168 4 PLIP interactions: 4 interactions with chain D Hydrogen bonds: D:V.145, D:Y.146, D:Y.146 Salt bridges: D:K.168 SO4.15: 4 residues within 4Å: Chain D: E.149, T.163, R.164, R.165 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:E.149, D:E.149, D:R.165

4 x CIT: CITRIC ACID(Non-functional Binders)

CIT.4: 1 residues within 4Å: Chain A: Y.75 No protein-ligand interaction detected (PLIP) CIT.8: 1 residues within 4Å: Chain B: Y.75 No protein-ligand interaction detected (PLIP) CIT.12: 1 residues within 4Å: Chain C: Y.75 No protein-ligand interaction detected (PLIP) CIT.16: 1 residues within 4Å: Chain D: Y.75 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Walker, J.R. et al., Structure of the Dusp-Ubl Domains of the Ubiquitin-Specific Protease 15. To be Published

Release Date

2011-01-19

Peptides

Ubiquitin carboxyl-terminal hydrolase 15: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

Ubiquitin carboxyl-terminal hydrolase 15