SMTL ID : 3ppe.1

Crystal structure of chicken VE-cadherin EC1-2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-dimer

Ligands

6 x CA: CALCIUM ION(Non-covalent)

CA.1: 5 residues within 4Å: Chain A: E.11, E.12, D.62, E.64, D.99 6 PLIP interactions: 5 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.11, A:E.12, A:D.62, A:E.64, A:D.99, H2O.5 CA.2: 6 residues within 4Å: Chain A: N.98, N.100, D.130, D.132, H.139, D.184 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:N.100, A:D.130, A:D.132, A:H.139, A:D.184 CA.3: 7 residues within 4Å: Chain A: E.11, E.64, D.96, I.97, D.99, N.100, D.132 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:E.11, A:D.96, A:I.97, A:D.99, A:D.132 CA.4: 5 residues within 4Å: Chain B: E.11, E.12, D.62, E.64, D.99 6 PLIP interactions: 5 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:E.11, B:E.12, B:D.62, B:E.64, B:D.99, H2O.17 CA.5: 6 residues within 4Å: Chain B: N.98, N.100, D.130, D.132, H.139, D.184 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:N.100, B:D.130, B:D.132, B:H.139, B:D.184 CA.6: 7 residues within 4Å: Chain B: E.11, E.64, D.96, I.97, D.99, N.100, D.132 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:E.11, B:D.96, B:I.97, B:D.99, B:D.132

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Brasch, J. et al., Structure and binding mechanism of vascular endothelial cadherin: a divergent classical cadherin. J.Mol.Biol. (2011)

Release Date

2011-02-02

Peptides

Vascular endothelial cadherin: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Vascular endothelial cadherin