SMTL ID : 3ppl.1

Crystal structure of an aspartate transaminase (NCgl0237, Cgl0240) from CORYNEBACTERIUM GLUTAMICUM ATCC 13032 KITASATO at 1.25 A resolution

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.25 Å

Oligo State

homo-dimer

Ligands

2 x PLP: PYRIDOXAL-5'-PHOSPHATE(Non-covalent)

PLP.1: 13 residues within 4Å: Chain A: S.104, S.105, L.106, Y.143, V.187, N.192, D.221, A.223, Y.224, S.257, S.259, K.260 Chain B: Y.74 17 PLIP interactions: 16 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:Y.143, A:V.187, A:A.223 Hydrogen bonds: A:S.105, A:S.105, A:L.106, A:N.192, A:Y.224, A:S.257, A:S.259, A:S.259, A:K.260, B:Y.74 Water bridges: A:S.105, A:S.105, A:K.260 pi-Stacking: A:Y.143 PLP.3: 13 residues within 4Å: Chain A: Y.74 Chain B: S.104, S.105, L.106, Y.143, V.187, N.192, D.221, A.223, Y.224, S.257, S.259, K.260 17 PLIP interactions: 16 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:Y.143, B:V.187, B:A.223 Hydrogen bonds: B:S.105, B:S.105, B:L.106, B:N.192, B:Y.224, B:S.257, B:S.259, B:S.259, B:K.260, A:Y.74 Water bridges: B:S.105, B:S.105, B:K.260 pi-Stacking: B:Y.143

2 x UNL: UNKNOWN LIGAND

UNL.2: 9 residues within 4Å: Chain A: G.41, K.42, Y.143, D.144, R.145, R.395 Chain B: Y.74, G.75, I.290 17 PLIP interactions: 15 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:Y.143, A:R.145, A:R.145, A:R.395, B:Y.74 Water bridges: A:G.41, A:G.41, A:G.41, A:G.41, A:K.42, A:K.42, A:K.42, A:K.42, A:R.145, A:N.192, A:R.395, B:G.76 UNL.4: 9 residues within 4Å: Chain A: Y.74, G.75, I.290 Chain B: G.41, K.42, Y.143, D.144, R.145, R.395 13 PLIP interactions: 9 interactions with chain B, 4 interactions with chain A Hydrogen bonds: B:K.42, B:Y.143, B:Y.143, B:D.144, B:R.145, B:R.395, A:Y.74 Water bridges: B:T.39, B:G.41, B:N.192, A:G.76, A:G.76, A:G.76

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 7 residues within 4Å: Chain B: L.229, T.230, A.322, F.325, L.329, V.346, P.347 1 PLIP interactions: 1 interactions with chain B Water bridges: B:L.229 GOL.6: 2 residues within 4Å: Chain B: Q.343, W.344 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:W.344 Water bridges: B:D.333, B:D.333

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of an aspartate transaminase (NCgl0237, Cgl0240) from CORYNEBACTERIUM GLUTAMICUM ATCC 13032 KITASATO at 1.25 A resolution. To be published

Release Date

2010-12-22

Peptides

ASPARTATE AMINOTRANSFERASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

ASPARTATE AMINOTRANSFERASE