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SMTL ID : 3ppl.1
Crystal structure of an aspartate transaminase (NCgl0237, Cgl0240) from CORYNEBACTERIUM GLUTAMICUM ATCC 13032 KITASATO at 1.25 A resolution
Coordinates
PDB Format
Compare
Method
X-RAY DIFFRACTION 1.25 Å
Oligo State
homo-dimer
Ligands
2 x
PLP
:
PYRIDOXAL-5'-PHOSPHATE
(Non-covalent)
PLP.1:
13 residues within 4Å:
Chain A:
S.104
,
S.105
,
L.106
,
Y.143
,
V.187
,
N.192
,
D.221
,
A.223
,
Y.224
,
S.257
,
S.259
,
K.260
Chain B:
Y.74
17
PLIP interactions
:
16 interactions with chain A
,
1 interactions with chain B
Hydrophobic interactions:
A:Y.143
,
A:V.187
,
A:A.223
Hydrogen bonds:
A:S.105
,
A:S.105
,
A:L.106
,
A:N.192
,
A:Y.224
,
A:S.257
,
A:S.259
,
A:S.259
,
A:K.260
,
B:Y.74
Water bridges:
A:S.105
,
A:S.105
,
A:K.260
pi-Stacking:
A:Y.143
PLP.3:
13 residues within 4Å:
Chain A:
Y.74
Chain B:
S.104
,
S.105
,
L.106
,
Y.143
,
V.187
,
N.192
,
D.221
,
A.223
,
Y.224
,
S.257
,
S.259
,
K.260
17
PLIP interactions
:
16 interactions with chain B
,
1 interactions with chain A
Hydrophobic interactions:
B:Y.143
,
B:V.187
,
B:A.223
Hydrogen bonds:
B:S.105
,
B:S.105
,
B:L.106
,
B:N.192
,
B:Y.224
,
B:S.257
,
B:S.259
,
B:S.259
,
B:K.260
,
A:Y.74
Water bridges:
B:S.105
,
B:S.105
,
B:K.260
pi-Stacking:
B:Y.143
2 x
UNL
:
UNKNOWN LIGAND
UNL.2:
9 residues within 4Å:
Chain A:
G.41
,
K.42
,
Y.143
,
D.144
,
R.145
,
R.395
Chain B:
Y.74
,
G.75
,
I.290
17
PLIP interactions
:
15 interactions with chain A
,
2 interactions with chain B
Hydrogen bonds:
A:Y.143
,
A:R.145
,
A:R.145
,
A:R.395
,
B:Y.74
Water bridges:
A:G.41
,
A:G.41
,
A:G.41
,
A:G.41
,
A:K.42
,
A:K.42
,
A:K.42
,
A:K.42
,
A:R.145
,
A:N.192
,
A:R.395
,
B:G.76
UNL.4:
9 residues within 4Å:
Chain A:
Y.74
,
G.75
,
I.290
Chain B:
G.41
,
K.42
,
Y.143
,
D.144
,
R.145
,
R.395
13
PLIP interactions
:
9 interactions with chain B
,
4 interactions with chain A
Hydrogen bonds:
B:K.42
,
B:Y.143
,
B:Y.143
,
B:D.144
,
B:R.145
,
B:R.395
,
A:Y.74
Water bridges:
B:T.39
,
B:G.41
,
B:N.192
,
A:G.76
,
A:G.76
,
A:G.76
2 x
GOL
:
GLYCEROL
(Non-functional Binders)
GOL.5:
7 residues within 4Å:
Chain B:
L.229
,
T.230
,
A.322
,
F.325
,
L.329
,
V.346
,
P.347
1
PLIP interactions
:
1 interactions with chain B
Water bridges:
B:L.229
GOL.6:
2 residues within 4Å:
Chain B:
Q.343
,
W.344
3
PLIP interactions
:
3 interactions with chain B
Hydrogen bonds:
B:W.344
Water bridges:
B:D.333
,
B:D.333
Links
RCSB
PDBe
PDBe-KB
PDBj
PDBsum
CATH
PLIP
Citation
Joint Center for Structural Genomics (JCSG), Crystal structure of an aspartate transaminase (NCgl0237, Cgl0240) from CORYNEBACTERIUM GLUTAMICUM ATCC 13032 KITASATO at 1.25 A resolution. To be published
Release Date
2010-12-22
Peptides
ASPARTATE AMINOTRANSFERASE:
A
B
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
B
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