SMTL ID : 3pr5.1

Dpo4 Y12A mutant incorporating ADP opposite template dT

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

monomer

Ligands

2 x CA: CALCIUM ION(Non-covalent)

CA.1: 2 residues within 4Å: Chain A: A.181, I.186 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:A.181, A:I.186 CA.2: 4 residues within 4Å: Chain A: D.7, F.8, D.105 Ligands: ATP.3 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.7, A:F.8, A:D.105, H2O.3

1 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.3: 17 residues within 4Å: Chain A: D.7, F.8, Y.10, F.11, A.12, A.44, T.45, Y.48, R.51, A.57, G.58, D.105, K.159 Chain B: C.13 Chain C: T.5, G.6 Ligands: CA.2 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:Y.10, A:F.11, A:A.12, A:Y.48, A:Y.48 Salt bridges: A:R.51, A:R.51, A:K.159

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kirouac, K.N. et al., Structural mechanism of ribonucleotide discrimination by a Y-family DNA polymerase. J.Mol.Biol. (2011)

Release Date

2011-02-23

Peptides

DNA polymerase IV: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

DNA polymerase IV

Related Entries With Identical Sequence