SMTL ID : 3psq.2 (1 other biounit)

Crystal structure of Spy0129, a Streptococcus pyogenes class B sortase involved in pilus biogenesis

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.32 Å

Oligo State

monomer

Ligands

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 5 residues within 4Å: Chain A: N.57, F.76, Y.93, E.191, R.198 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.198, A:R.198 Water bridges: A:E.191

2 x ACY: ACETIC ACID(Non-functional Binders)

ACY.2: 5 residues within 4Å: Chain A: N.33, D.35, Y.60, K.63, G.67 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.33, A:N.33 Salt bridges: A:K.63 ACY.3: 5 residues within 4Å: Chain A: T.141, D.142, A.143, T.194, R.198 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:T.194, A:R.198 Salt bridges: A:R.198

11 x ZN: ZINC ION(Non-functional Binders)(Non-covalent)

ZN.4: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) ZN.5: 2 residues within 4Å: Chain A: H.46, E.105 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:H.46, A:E.105 ZN.6: 1 residues within 4Å: Chain A: H.46 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.46, H2O.3 ZN.7: 2 residues within 4Å: Chain A: G.44, H.118 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:G.44, A:H.118, H2O.3 ZN.8: 1 residues within 4Å: Chain A: E.206 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:E.206, A:E.206, H2O.2, H2O.2, H2O.2 ZN.9: 4 residues within 4Å: Chain A: H.95, C.190, D.192, M.193 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.95, A:C.190, A:D.192, A:D.192, H2O.2 ZN.10: 2 residues within 4Å: Chain A: H.96, G.104 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.96, H2O.3, H2O.4 ZN.11: 2 residues within 4Å: Chain A: E.161, H.165 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.161, A:H.165, H2O.2 ZN.12: 2 residues within 4Å: Chain A: E.124, K.128 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.124, A:E.124, H2O.3 ZN.13: 4 residues within 4Å: Chain A: D.145, S.146, L.147, H.165 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:S.146, A:H.165 ZN.14: 3 residues within 4Å: Chain A: D.35, E.55, E.59 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.35, A:E.55, A:E.55, A:E.59, A:E.59

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kang, H.J. et al., Crystal structure of Spy0129, a Streptococcus pyogenes class B sortase involved in pilus assembly. Plos One (2011)

Release Date

2011-01-19

Peptides

Hypothetical exported protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Hypothetical exported protein

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