SMTL ID : 3pt1.1

Structure of DUF89 from Saccharomyces cerevisiae co-crystallized with F6P.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.77 Å

Oligo State

monomer

Ligands

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 5 residues within 4Å: Chain A: W.191, A.194, T.195, D.196, S.220 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.196 Water bridges: A:S.220, A:S.220

1 x F6P: 6-O-phosphono-beta-D-fructofuranose(Non-covalent)

F6P.2: 13 residues within 4Å: Chain A: F.16, T.20, R.24, W.107, E.111, D.255, N.256, G.384, D.385, L.386, R.389, K.424 Ligands: MG.3 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:R.24, A:R.24, A:E.111, A:N.256, A:D.385, A:D.385, A:L.386, A:R.389, A:K.424 Water bridges: A:E.111, A:N.387

1 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 4 residues within 4Å: Chain A: D.255, N.256, D.293 Ligands: F6P.2 5 PLIP interactions: 2 interactions with chain A, 1 Ligand-Ligand interactions, 2 Ligand-Water interactions Metal complexes: A:D.255, A:D.293, F6P.2, H2O.5, H2O.5

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Brown, G. et al., Structure and activity of a DUF89 protein from Saccharomyces cerevisiae revealed a novel family of carbohydrate phosphatases. To be Published

Release Date

2010-12-15

Peptides

UPF0364 protein YMR027W: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

UPF0364 protein YMR027W

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