SMTL ID : 3pt6.2 (1 other biounit)

Crystal structure of mouse DNMT1(650-1602) in complex with DNA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

monomer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain C: H.148, C.175, C.249, C.252 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:H.148, C:C.175, C:C.249, C:C.252 ZN.3: 4 residues within 4Å: Chain C: C.8, C.11, C.14, C.46 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.8, C:C.11, C:C.14, C:C.46 ZN.4: 4 residues within 4Å: Chain C: C.19, C.22, C.25, C.41 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.19, C:C.22, C:C.25, C:C.41 ZN.5: 4 residues within 4Å: Chain C: C.831, C.833, C.839, H.856 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.831, C:C.833, C:C.839, C:H.856

1 x SAH: S-ADENOSYL-L-HOMOCYSTEINE(Non-covalent)

SAH.2: 18 residues within 4Å: Chain C: F.500, S.501, G.502, C.503, G.504, G.505, L.506, E.523, M.524, W.525, E.544, D.545, C.546, G.578, L.602, E.621, A.933, V.934 12 PLIP interactions: 12 interactions with chain C Hydrogen bonds: C:C.503, C:G.504, C:G.505, C:L.506, C:M.524, C:D.545, C:C.546, C:E.621, C:E.621, C:V.934 Water bridges: C:S.507 pi-Stacking: C:F.500

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Song, J. et al., Structure of DNMT1-DNA complex reveals a role for autoinhibition in maintenance DNA methylation. Science (2011)

Release Date

2010-12-29

Peptides

DNA (cytosine-5)-methyltransferase 1: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

C
B

DNA (cytosine-5)-methyltransferase 1

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