SMTL ID : 3pvr.1 (1 other biounit)

The Phenylacetyl-CoA monooxygenase PaaAC subcomplex with benzoyl-CoA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

hetero-2-2-mer

Ligands

2 x BYC: benzoyl coenzyme A(Non-covalent)

BYC.1: 34 residues within 4Å: Chain A: R.35, Q.36, Q.39, H.40, S.43, E.44, E.51, K.70, E.74, K.105, Y.106, S.107, S.108, F.110, V.127, D.128, A.131, N.134, L.138, Y.146, E.157, M.195, M.196, F.197, G.198, P.199, S.204, P.205, N.206, K.216, N.220, F.266, I.270 Ligands: GOL.3 25 PLIP interactions: 25 interactions with chain A Hydrophobic interactions: A:E.74, A:V.127 Hydrogen bonds: A:R.35, A:Q.36, A:Q.39, A:Q.39, A:S.43, A:S.108, A:N.134, A:M.195, A:S.204, A:N.206, A:N.206, A:N.220 Water bridges: A:R.35, A:R.35, A:Q.36, A:K.105 Salt bridges: A:R.35, A:R.35, A:K.105, A:K.216, A:K.216 pi-Stacking: A:F.110, A:F.266 BYC.8: 34 residues within 4Å: Chain C: R.35, Q.36, Q.39, H.40, S.43, E.44, E.51, K.70, E.74, K.105, Y.106, S.107, S.108, F.110, V.127, D.128, A.131, N.134, L.138, Y.146, E.157, M.195, M.196, F.197, G.198, P.199, S.204, P.205, N.206, K.216, N.220, F.266, I.270 Ligands: GOL.10 25 PLIP interactions: 25 interactions with chain C Hydrophobic interactions: C:E.74, C:V.127 Hydrogen bonds: C:R.35, C:Q.36, C:Q.39, C:Q.39, C:S.43, C:S.108, C:N.134, C:M.195, C:S.204, C:N.206, C:N.206, C:N.220 Water bridges: C:R.35, C:R.35, C:Q.36, C:K.105 Salt bridges: C:R.35, C:R.35, C:K.105, C:K.216, C:K.216 pi-Stacking: C:F.110, C:F.266

12 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 8 residues within 4Å: Chain A: N.200, D.221, R.224, F.258, G.259, E.260, I.261, W.263 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.200, A:D.221, A:R.224, A:W.263 GOL.3: 2 residues within 4Å: Chain A: R.35 Ligands: BYC.1 3 PLIP interactions: 3 interactions with chain A Water bridges: A:Q.39, A:N.206, A:N.206 GOL.4: 4 residues within 4Å: Chain A: W.288, T.292, R.295, E.296 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:W.288, A:R.295, A:R.295 GOL.5: 6 residues within 4Å: Chain B: D.77, T.78, T.82, Q.251, P.255, G.256 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:G.256 Water bridges: B:D.77, B:Q.251, B:Q.251, B:Q.251, B:Q.251 GOL.6: 9 residues within 4Å: Chain B: Y.18, R.21, L.22, N.25, L.91, W.114, D.187, P.199, K.232 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:R.21, B:N.25, B:N.25 Water bridges: B:L.180, B:D.182 GOL.7: 5 residues within 4Å: Chain B: E.35, W.36, H.39, N.98, G.99 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:E.35, B:N.98, B:G.99 Water bridges: B:N.98 GOL.9: 8 residues within 4Å: Chain C: N.200, D.221, R.224, F.258, G.259, E.260, I.261, W.263 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:N.200, C:D.221, C:R.224, C:W.263 GOL.10: 2 residues within 4Å: Chain C: R.35 Ligands: BYC.8 3 PLIP interactions: 3 interactions with chain C Water bridges: C:Q.39, C:N.206, C:N.206 GOL.11: 4 residues within 4Å: Chain C: W.288, T.292, R.295, E.296 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:W.288, C:R.295, C:R.295 GOL.12: 6 residues within 4Å: Chain D: D.77, T.78, T.82, Q.251, P.255, G.256 7 PLIP interactions: 7 interactions with chain D Hydrogen bonds: D:G.256 Water bridges: D:D.77, D:D.77, D:Q.251, D:Q.251, D:Q.251, D:Q.251 GOL.13: 9 residues within 4Å: Chain D: Y.18, R.21, L.22, N.25, L.91, W.114, D.187, P.199, K.232 5 PLIP interactions: 5 interactions with chain D Hydrogen bonds: D:R.21, D:N.25, D:N.25 Water bridges: D:L.180, D:D.182 GOL.14: 5 residues within 4Å: Chain D: E.35, W.36, H.39, N.98, G.99 5 PLIP interactions: 5 interactions with chain D Hydrogen bonds: D:E.35, D:E.35, D:N.98, D:G.99 Water bridges: D:N.98

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Grishin, A.M. et al., Structural and Functional Studies of the Escherichia coli Phenylacetyl-CoA Monooxygenase Complex. J.Biol.Chem. (2011)

Release Date

2011-01-19

Peptides

Phenylacetic acid degradation protein paaA: AC
Phenylacetic acid degradation protein paaC: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

B
C

D
C

Phenylacetic acid degradation protein paaA

Phenylacetic acid degradation protein paaC

Related Entries With Identical Sequence