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SMTL ID : 3pwi.2
(1 other biounit)
Crystal structure of the mutant P34A of D-Glucarate dehydratase from Escherichia coli complexed with product 5-keto-4-deoxy-D-Glucarate
Coordinates
PDB Format
Compare
Method
X-RAY DIFFRACTION 2.23 Å
Oligo State
homo-dimer
Ligands
2 x
MG
:
MAGNESIUM ION
(Non-covalent)
MG.1:
6 residues within 4Å:
Chain A:
D.235
,
N.237
,
E.260
,
D.261
,
N.289
Ligands:
GLR.2
3
PLIP interactions
:
3 interactions with chain A
Metal complexes:
A:D.235
,
A:D.235
,
A:E.260
MG.4:
6 residues within 4Å:
Chain B:
D.235
,
N.237
,
E.260
,
D.261
,
N.289
Ligands:
GLR.5
3
PLIP interactions
:
3 interactions with chain B
Metal complexes:
B:D.235
,
B:D.235
,
B:E.260
2 x
GLR
:
2,3-DIHYDROXY-5-OXO-HEXANEDIOATE
(Non-covalent)
GLR.2:
18 residues within 4Å:
Chain A:
N.27
,
H.32
,
T.103
,
F.104
,
Y.150
,
F.152
,
K.205
,
K.207
,
D.235
,
N.237
,
E.260
,
N.289
,
H.339
,
S.340
,
N.341
,
H.368
,
R.422
Ligands:
MG.1
19
PLIP interactions
:
19 interactions with chain A
Hydrogen bonds:
A:N.27
,
A:T.103
,
A:Y.150
,
A:K.207
,
A:N.237
,
A:N.289
,
A:R.422
,
A:R.422
Water bridges:
A:K.205
,
A:S.340
,
A:N.341
,
A:H.368
Salt bridges:
A:H.32
,
A:K.205
,
A:K.207
,
A:K.207
,
A:H.339
,
A:H.368
,
A:R.422
GLR.5:
18 residues within 4Å:
Chain B:
N.27
,
H.32
,
T.103
,
F.104
,
Y.150
,
F.152
,
K.205
,
K.207
,
D.235
,
N.237
,
E.260
,
N.289
,
H.339
,
S.340
,
N.341
,
H.368
,
R.422
Ligands:
MG.4
19
PLIP interactions
:
19 interactions with chain B
Hydrogen bonds:
B:N.27
,
B:T.103
,
B:Y.150
,
B:Y.150
,
B:K.207
,
B:N.237
,
B:R.422
,
B:R.422
Water bridges:
B:S.340
,
B:N.341
,
B:D.366
,
B:H.368
Salt bridges:
B:H.32
,
B:K.205
,
B:K.207
,
B:K.207
,
B:H.339
,
B:H.368
,
B:R.422
2 x
GOL
:
GLYCEROL
(Non-functional Binders)
GOL.3:
6 residues within 4Å:
Chain A:
L.302
,
Q.305
,
F.332
Chain B:
G.299
,
L.302
,
S.303
3
PLIP interactions
:
3 interactions with chain A
Hydrogen bonds:
A:F.332
Water bridges:
A:L.302
,
A:Q.305
GOL.6:
6 residues within 4Å:
Chain A:
G.299
,
L.302
,
S.303
Chain B:
L.302
,
Q.305
,
F.332
3
PLIP interactions
:
3 interactions with chain B
Hydrogen bonds:
B:F.332
Water bridges:
B:L.302
,
B:Q.305
Links
RCSB
PDBe
PDBe-KB
PDBj
PDBsum
CATH
PLIP
Citation
Fedorov, A.A. et al., Crystal structure of the mutant P34A of D-Glucarate dehydratase from Escherichia Coli complexed with product 5-keto-4-deoxy-D-Glucarate. To be Published
Release Date
2011-12-28
Peptides
Glucarate dehydratase:
A
B
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
B
B
B
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