SMTL ID : 3pyy.1 (1 other biounit)

Discovery and Characterization of a Cell-Permeable, Small-molecule c-Abl Kinase Activator that Binds to the Myristoyl Binding Site

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

monomer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: R.246, E.248, G.249 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.249, A:C.250 Salt bridges: A:R.246 SO4.2: 2 residues within 4Å: Chain A: R.259, Q.263 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.263 Salt bridges: A:R.259

1 x STI: 4-(4-METHYL-PIPERAZIN-1-YLMETHYL)-N-[4-METHYL-3-(4-PYRIDIN-3-YL-PYRIMIDIN-2-YLAMINO)-PHENYL]-BENZAMIDE(Non-covalent)

STI.3: 22 residues within 4Å: Chain A: L.34, Y.39, V.42, A.55, K.57, E.72, V.75, M.76, I.79, V.85, I.99, T.101, F.103, M.104, G.107, I.146, H.147, R.148, L.156, A.166, D.167, F.168 17 PLIP interactions: 17 interactions with chain A Hydrophobic interactions: A:L.34, A:L.34, A:Y.39, A:A.55, A:V.85, A:I.99, A:T.101, A:D.167, A:F.168 Hydrogen bonds: A:E.72, A:T.101, A:T.101, A:M.104, A:D.167 Salt bridges: A:D.167 pi-Stacking: A:Y.39 pi-Cation interactions: A:H.147

1 x 3YY: (5R)-5-[3-(4-fluorophenyl)-1-phenyl-1H-pyrazol-4-yl]imidazolidine-2,4-dione(Non-covalent)

3YY.4: 12 residues within 4Å: Chain A: A.123, L.126, L.127, A.130, L.215, I.218, A.219, E.248, G.249, C.250, P.251, V.254 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:L.126, A:L.127, A:L.127, A:I.218, A:A.219, A:V.254 Hydrogen bonds: A:E.248 Water bridges: A:Y.221

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yang, J. et al., Discovery and Characterization of a Cell-Permeable, Small-Molecule c-Abl Kinase Activator that Binds to the Myristoyl Binding Site. Chem.Biol. (2011)

Release Date

2011-03-09

Peptides

V-abl Abelson murine leukemia viral oncogene homolog 1 isoform b variant: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

V-abl Abelson murine leukemia viral oncogene homolog 1 isoform b variant

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