SMTL ID : 3pzl.1

The crystal structure of agmatine ureohydrolase of Thermoplasma volcanium

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

homo-hexamer

Ligands

12 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 6 residues within 4Å: Chain A: H.124, D.144, D.148, H.160, D.229 Ligands: MN.2 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:H.124, A:D.144, A:D.148, A:D.148, A:D.229 MN.2: 5 residues within 4Å: Chain A: D.144, H.146, D.229, D.231 Ligands: MN.1 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.144, A:D.229, A:D.231, A:D.231 MN.3: 6 residues within 4Å: Chain B: H.124, D.144, D.148, H.160, D.229 Ligands: MN.4 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:H.124, B:D.144, B:D.148, B:D.148, B:D.229 MN.4: 6 residues within 4Å: Chain B: D.144, H.146, D.148, D.229, D.231 Ligands: MN.3 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:D.144, B:H.146, B:D.229, B:D.231, B:D.231 MN.5: 5 residues within 4Å: Chain C: D.144, H.146, D.229, D.231 Ligands: MN.6 5 PLIP interactions: 5 interactions with chain C Metal complexes: C:D.144, C:H.146, C:D.229, C:D.231, C:D.231 MN.6: 5 residues within 4Å: Chain C: H.124, D.144, D.148, D.229 Ligands: MN.5 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:H.124, C:D.144, C:D.148, C:D.229 MN.7: 6 residues within 4Å: Chain D: H.124, D.144, D.148, H.160, D.229 Ligands: MN.8 5 PLIP interactions: 5 interactions with chain D Metal complexes: D:H.124, D:D.144, D:D.148, D:D.148, D:D.229 MN.8: 5 residues within 4Å: Chain D: D.144, H.146, D.229, D.231 Ligands: MN.7 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:D.144, D:D.229, D:D.231, D:D.231 MN.9: 6 residues within 4Å: Chain E: H.124, D.144, D.148, H.160, D.229 Ligands: MN.10 5 PLIP interactions: 5 interactions with chain E Metal complexes: E:H.124, E:D.144, E:D.148, E:D.148, E:D.229 MN.10: 6 residues within 4Å: Chain E: D.144, H.146, D.148, D.229, D.231 Ligands: MN.9 5 PLIP interactions: 5 interactions with chain E Metal complexes: E:D.144, E:H.146, E:D.229, E:D.231, E:D.231 MN.11: 5 residues within 4Å: Chain F: D.144, H.146, D.229, D.231 Ligands: MN.12 5 PLIP interactions: 5 interactions with chain F Metal complexes: F:D.144, F:H.146, F:D.229, F:D.231, F:D.231 MN.12: 5 residues within 4Å: Chain F: H.124, D.144, D.148, D.229 Ligands: MN.11 4 PLIP interactions: 4 interactions with chain F Metal complexes: F:H.124, F:D.144, F:D.148, F:D.229

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, Z. et al., The crystal structure of agmatine ureohydrolase of Thermoplasma volcanium. To be Published

Release Date

2011-01-19

Peptides

Agmatine ureohydrolase: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
A

E
B

F
C

Agmatine ureohydrolase