SMTL ID : 3q2l.1

Mouse E-cadherin EC1-2 V81D mutant

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

homo-dimer

Ligands

8 x CA: CALCIUM ION(Non-covalent)

CA.1: 7 residues within 4Å: Chain A: E.11, E.69, D.100, Q.101, D.103, N.104, D.136 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:E.11, A:E.69, A:E.69, A:D.100, A:D.136 CA.2: 6 residues within 4Å: Chain A: N.102, N.104, D.134, D.136, N.143, D.195 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:N.104, A:D.134, A:D.136, A:N.143, A:D.195 CA.3: 4 residues within 4Å: Chain A: E.11, D.67, E.69, D.103 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.11, A:D.67, A:E.69, A:D.103, H2O.1 CA.4: 3 residues within 4Å: Chain A: E.119, D.180, E.182 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:E.119, A:E.119, A:D.180 CA.6: 7 residues within 4Å: Chain B: E.11, E.69, D.100, Q.101, D.103, N.104, D.136 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:E.11, B:E.69, B:E.69, B:D.100, B:D.136 CA.7: 6 residues within 4Å: Chain B: N.102, N.104, D.134, D.136, N.143, D.195 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:N.104, B:D.134, B:D.136, B:N.143, B:D.195 CA.8: 4 residues within 4Å: Chain B: E.11, D.67, E.69, D.103 6 PLIP interactions: 4 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:E.11, B:D.67, B:E.69, B:D.103, H2O.7, H2O.10 CA.9: 3 residues within 4Å: Chain B: E.119, D.180, E.182 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:E.119, B:D.180, B:E.182

2 x 1PE: PENTAETHYLENE GLYCOL(Non-functional Binders)

1PE.5: 4 residues within 4Å: Chain A: K.73, I.75, E.93, V.95 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.73 1PE.10: 3 residues within 4Å: Chain B: K.73, I.75, V.95 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:K.73

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Harrison, O.J. et al., The extracellular architecture of adherens junctions revealed by crystal structures of type I cadherins. Structure (2011)

Release Date

2011-02-23

Peptides

Cadherin-1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Cadherin-1