SMTL ID : 3q3c.1

Crystal structure of a serine dehydrogenase from Pseudomonas aeruginosa pao1 in complex with NAD

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-tetramer

Ligands

4 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)

NAD.1: 23 residues within 4Å: Chain A: I.8, G.9, L.10, G.11, H.12, M.13, G.14, F.31, D.32, L.33, V.34, M.65, L.66, P.67, L.75, T.97, V.122, G.124, K.172, F.240, L.244, K.247, D.248 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:F.240 Hydrogen bonds: A:L.10, A:L.10, A:H.12, A:G.14, A:L.33, A:L.66, A:T.97, A:T.97, A:K.247, A:K.247 Water bridges: A:H.12, A:K.172 NAD.2: 23 residues within 4Å: Chain B: I.8, G.9, L.10, G.11, H.12, M.13, G.14, F.31, D.32, L.33, V.34, M.65, L.66, P.67, L.75, T.97, V.122, G.124, K.172, F.240, L.244, K.247, D.248 13 PLIP interactions: 13 interactions with chain B Hydrophobic interactions: B:F.240 Hydrogen bonds: B:L.10, B:L.10, B:H.12, B:G.14, B:L.33, B:L.66, B:T.97, B:T.97, B:K.247, B:K.247 Water bridges: B:H.12, B:K.172 NAD.3: 23 residues within 4Å: Chain C: I.8, G.9, L.10, G.11, H.12, M.13, G.14, F.31, D.32, L.33, V.34, M.65, L.66, P.67, L.75, T.97, V.122, G.124, K.172, F.240, L.244, K.247, D.248 13 PLIP interactions: 13 interactions with chain C Hydrophobic interactions: C:F.240 Hydrogen bonds: C:L.10, C:L.10, C:H.12, C:G.14, C:L.33, C:L.66, C:T.97, C:K.247, C:K.247 Water bridges: C:H.12, C:T.97, C:K.172 NAD.4: 23 residues within 4Å: Chain D: I.8, G.9, L.10, G.11, H.12, M.13, G.14, F.31, D.32, L.33, V.34, M.65, L.66, P.67, L.75, T.97, V.122, G.124, K.172, F.240, L.244, K.247, D.248 13 PLIP interactions: 13 interactions with chain D Hydrophobic interactions: D:F.240 Hydrogen bonds: D:L.10, D:L.10, D:H.12, D:G.14, D:L.33, D:L.66, D:T.97, D:K.247, D:K.247 Water bridges: D:H.12, D:T.97, D:K.172

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tchigvintsev, A. et al., Biochemical and Structural Studies of Uncharacterized Protein PA0743 from Pseudomonas aeruginosa Revealed NAD+-dependent L-Serine Dehydrogenase. J.Biol.Chem. (2012)

Release Date

2011-02-23

Peptides

Probable 3-hydroxyisobutyrate dehydrogenase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

Probable 3-hydroxyisobutyrate dehydrogenase