SMTL ID : 3q41.2 (1 other biounit)

Crystal structure of the GluN1 N-terminal domain (NTD)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.40 Å

Oligo State

homo-dimer

Ligands

10 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 5 residues within 4Å: Chain A: I.6, N.8, N.41, A.42, T.43 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:I.6 Hydrogen bonds: A:N.41 NAG.2: 3 residues within 4Å: Chain A: N.183, T.185, A.186 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.185 NAG.3: 2 residues within 4Å: Chain A: N.219, S.223 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.219, A:S.223 NAG.4: 3 residues within 4Å: Chain A: N.253, N.256, V.314 No protein-ligand interaction detected (PLIP) NAG.5: 4 residues within 4Å: Chain A: N.348, T.350, H.351, I.353 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.348, A:H.351 NAG.8: 5 residues within 4Å: Chain B: I.6, N.8, N.41, A.42, T.43 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:I.6 Hydrogen bonds: B:N.41 NAG.9: 3 residues within 4Å: Chain B: N.183, T.185, A.186 No protein-ligand interaction detected (PLIP) NAG.10: 2 residues within 4Å: Chain B: N.219, S.223 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:N.219, B:S.223 NAG.11: 3 residues within 4Å: Chain B: N.253, N.256, V.314 No protein-ligand interaction detected (PLIP) NAG.12: 4 residues within 4Å: Chain B: N.348, T.350, H.351, I.353 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.348

4 x CL: CHLORIDE ION(Non-functional Binders)

CL.6: 6 residues within 4Å: Chain A: Y.108, S.109, D.110, I.113, H.114, G.324 Ligand excluded by PLIP CL.7: 2 residues within 4Å: Chain A: D.178, T.181 Ligand excluded by PLIP CL.13: 6 residues within 4Å: Chain B: Y.108, S.109, D.110, I.113, H.114, G.324 Ligand excluded by PLIP CL.14: 2 residues within 4Å: Chain B: D.178, T.181 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Farina, A.N. et al., Separation of Domain Contacts Is Required for Heterotetrameric Assembly of Functional NMDA Receptors. J.Neurosci. (2011)

Release Date

2011-03-23

Peptides

Glutamate [NMDA] receptor subunit zeta-1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
C

Glutamate [NMDA] receptor subunit zeta-1

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