SMTL ID : 3q5e.4 (3 other biounits)

crystal structure of human Atlastin-1 (residues 1-447) bound to GDP, crystal form 2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.01 Å

Oligo State

monomer

Ligands

1 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.1: 20 residues within 4Å: Chain A: A.75, F.76, R.77, K.78, G.79, K.80, S.81, F.82, R.113, Q.148, R.217, D.218, H.271, P.272, V.276, A.277, N.279, P.280, F.293 Ligands: MG.2 17 PLIP interactions: 17 interactions with chain A Hydrogen bonds: A:R.77, A:K.78, A:G.79, A:K.80, A:S.81, A:S.81, A:F.82, A:Q.148, A:Q.148, A:Q.148, A:R.217, A:H.271, A:P.280 Salt bridges: A:K.80, A:R.113, A:D.218 pi-Cation interactions: A:H.271

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 5 residues within 4Å: Chain A: S.81, Q.124, D.146, Q.148 Ligands: GDP.1 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Byrnes, L.J. et al., Structural basis for the nucleotide-dependent dimerization of the large G protein atlastin-1/SPG3A. Proc.Natl.Acad.Sci.USA (2011)

Release Date

2011-01-19

Peptides

Atlastin-1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
G

Atlastin-1

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