SMTL ID : 3q5m.2 (1 other biounit)

Crystal structure of Escherichia coli BamD

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

homo-dimer

Ligands

14 x IOD: IODIDE ION(Non-functional Binders)

IOD.1: 2 residues within 4Å: Chain A: P.65, L.66 Ligand excluded by PLIP IOD.2: 1 residues within 4Å: Chain B: R.131 Ligand excluded by PLIP IOD.3: 4 residues within 4Å: Chain A: N.9, I.14, T.17, Q.33 Ligand excluded by PLIP IOD.4: 3 residues within 4Å: Chain A: E.4, N.39, R.40 Ligand excluded by PLIP IOD.5: 5 residues within 4Å: Chain A: L.37, G.44, P.45, Y.46, S.47 Ligand excluded by PLIP IOD.6: 1 residues within 4Å: Chain A: P.45 Ligand excluded by PLIP IOD.7: 1 residues within 4Å: Chain A: N.78 Ligand excluded by PLIP IOD.8: 2 residues within 4Å: Chain B: P.65, L.66 Ligand excluded by PLIP IOD.9: 1 residues within 4Å: Chain A: R.131 Ligand excluded by PLIP IOD.10: 4 residues within 4Å: Chain B: N.9, I.14, T.17, Q.33 Ligand excluded by PLIP IOD.11: 3 residues within 4Å: Chain B: E.4, N.39, R.40 Ligand excluded by PLIP IOD.12: 5 residues within 4Å: Chain B: L.37, G.44, P.45, Y.46, S.47 Ligand excluded by PLIP IOD.13: 1 residues within 4Å: Chain B: P.45 Ligand excluded by PLIP IOD.14: 1 residues within 4Å: Chain B: N.78 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dong, C. et al., Structure of Escherichia coli BamD and its functional implications in outer membrane protein assembly. Acta Crystallogr.,Sect.D (2012)

Release Date

2011-12-28

Peptides

UPF0169 lipoprotein yfiO: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

UPF0169 lipoprotein yfiO

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