SMTL ID : 3q7g.1

Crystal Structure of E2 domain of Human Amyloid Precursor-Like Protein 1 in complex with SOS (sucrose octasulfate)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-dimer

Ligands

3 x GU4- YYJ: 1,3,4,6-tetra-O-sulfo-beta-D-fructofuranose-(2-1)-2,3,4,6-tetra-O-sulfonato-alpha-D-glucopyranose(Non-covalent)

GU4-YYJ.1: 11 residues within 4Å: Chain A: S.25, H.27, V.100, L.103, Q.107, R.138, K.142, R.145, H.146, R.149, H.209 11 PLIP interactions: 11 interactions with chain A Water bridges: A:Q.141, A:K.142, A:K.142, A:R.145, A:E.26, A:E.26, A:E.26, A:K.142, A:K.142 Salt bridges: A:R.138, A:R.138, A:K.142, A:R.145, A:H.146, A:R.149, A:H.209, A:H.27, A:H.27, A:K.142, A:H.146 Hydrogen bonds: A:S.25, A:Q.107 GU4-YYJ.2: 14 residues within 4Å: Chain A: H.27, F.30, L.31, K.34, R.89, V.93, H.96, R.149, H.150, H.153, V.157 Chain B: K.34, H.153, V.157 7 PLIP interactions: 5 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:H.153 Salt bridges: A:K.34, A:H.96, A:H.150, A:H.153, B:K.34, A:K.34, A:R.89, A:R.89, A:H.153, A:H.153, B:H.153, B:H.153 GU4-YYJ.3: 10 residues within 4Å: Chain B: S.25, E.26, H.27, H.96, V.100, L.103, Q.107, K.142, H.146, R.149 12 PLIP interactions: 12 interactions with chain B Hydrogen bonds: B:S.25, B:Q.107, B:K.142 Water bridges: B:H.27, B:H.27, B:H.27, B:R.149, B:H.27, B:H.27, B:K.142, B:R.149 Salt bridges: B:H.27, B:K.142, B:R.149, B:H.27, B:H.96, B:H.96, B:K.142, B:K.142, B:R.149

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xue, Y. et al., Crystal Structure of the E2 Domain of Amyloid Precursor Protein-like Protein 1 in Complex with Sucrose Octasulfate. J.Biol.Chem. (2011)

Release Date

2011-06-22

Peptides

Amyloid-like protein 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Amyloid-like protein 1

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