SMTL ID : 3q8y.7 (7 other biounits)

Crystal structure of Staphylococcus aureus nucleoside diphosphate kinase complexed with ADP and Vanadate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

monomer

Ligands

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 10 residues within 4Å: Chain A: K.9, Y.49, H.52, F.57, L.61, F.64, T.91, V.109, G.110 Ligands: VO4.2 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:K.9, A:K.9, A:T.91, A:G.110 Salt bridges: A:H.52 pi-Stacking: A:F.57

1 x VO4: VANADATE ION(Non-covalent)

VO4.2: 7 residues within 4Å: Chain A: K.9, Y.49, R.102, I.114, H.115, G.116 Ligands: ADP.1 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:K.9, A:K.9, A:Y.49, A:R.102, A:G.116

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Srivastava, S.K. et al., Conformational basis for substrate recognition and regulation of catalytic activity in Staphylococcus aureus nucleoside di-phosphate kinase. Biochim.Biophys.Acta (2011)

Release Date

2011-07-27

Peptides

Nucleoside diphosphate kinase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
G

Nucleoside diphosphate kinase

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