SMTL ID : 3q94.2 (1 other biounit)

The crystal structure of fructose 1,6-bisphosphate aldolase from Bacillus anthracis str. 'Ames Ancestor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-tetramer

Ligands

20 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: H.89, H.184, H.212 Ligands: 13P.6 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.89, A:H.184, A:H.212 ZN.2: 2 residues within 4Å: Chain A: S.91, H.114 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.114, H2O.7 ZN.3: 3 residues within 4Å: Chain A: H.59 Chain B: R.261 Chain C: D.150 4 PLIP interactions: 2 interactions with chain C, 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: C:D.150, C:D.150, A:H.59, H2O.12 ZN.4: 2 residues within 4Å: Chain A: E.117, H.166 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.166, H2O.7 ZN.7: 2 residues within 4Å: Chain A: E.238, E.242 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:E.238, A:E.242 ZN.10: 1 residues within 4Å: Chain B: E.199 3 PLIP interactions: 1 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:E.199, H2O.10, H2O.12 ZN.11: 4 residues within 4Å: Chain B: H.89, H.184, H.212 Ligands: 13P.16 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:H.89, B:H.184, B:H.212 ZN.12: 1 residues within 4Å: Chain B: H.59 3 PLIP interactions: 1 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:H.59, H2O.1, H2O.8 ZN.13: 3 residues within 4Å: Chain B: H.114, P.115, E.118 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:H.114, B:E.118, B:E.118 ZN.14: 1 residues within 4Å: Chain B: H.113 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:H.113 ZN.19: 4 residues within 4Å: Chain C: H.89, H.184, H.212 Ligands: 13P.24 3 PLIP interactions: 3 interactions with chain C Metal complexes: C:H.89, C:H.184, C:H.212 ZN.20: 2 residues within 4Å: Chain C: S.91, H.114 2 PLIP interactions: 1 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:H.114, H2O.21 ZN.21: 3 residues within 4Å: Chain A: D.150 Chain C: H.59 Chain D: R.261 4 PLIP interactions: 1 interactions with chain C, 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: C:H.59, A:D.150, A:D.150, H2O.26 ZN.22: 2 residues within 4Å: Chain C: E.117, H.166 2 PLIP interactions: 1 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:H.166, H2O.21 ZN.25: 2 residues within 4Å: Chain C: E.238, E.242 2 PLIP interactions: 2 interactions with chain C Metal complexes: C:E.238, C:E.242 ZN.28: 1 residues within 4Å: Chain D: E.199 3 PLIP interactions: 1 interactions with chain D, 2 Ligand-Water interactions Metal complexes: D:E.199, H2O.24, H2O.26 ZN.29: 4 residues within 4Å: Chain D: H.89, H.184, H.212 Ligands: 13P.34 3 PLIP interactions: 3 interactions with chain D Metal complexes: D:H.89, D:H.184, D:H.212 ZN.30: 1 residues within 4Å: Chain D: H.59 3 PLIP interactions: 1 interactions with chain D, 2 Ligand-Water interactions Metal complexes: D:H.59, H2O.15, H2O.22 ZN.31: 3 residues within 4Å: Chain D: H.114, P.115, E.118 3 PLIP interactions: 3 interactions with chain D Metal complexes: D:H.114, D:E.118, D:E.118 ZN.32: 1 residues within 4Å: Chain D: H.113 1 PLIP interactions: 1 interactions with chain D Metal complexes: D:H.113

4 x NA: SODIUM ION(Non-functional Binders)

NA.5: 6 residues within 4Å: Chain A: V.183, G.185, Y.187, G.213, T.215 Ligands: 13P.6 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.185, A:G.185 NA.15: 6 residues within 4Å: Chain B: V.183, G.185, Y.187, G.213, T.215 Ligands: 13P.16 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:G.185, B:G.185, B:Y.187 NA.23: 6 residues within 4Å: Chain C: V.183, G.185, Y.187, G.213, T.215 Ligands: 13P.24 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:G.185, C:Y.187, C:T.215 NA.33: 6 residues within 4Å: Chain D: V.183, G.185, Y.187, G.213, T.215 Ligands: 13P.34 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:G.185, D:Y.187

4 x 13P: 1,3-DIHYDROXYACETONEPHOSPHATE(Non-covalent)

13P.6: 17 residues within 4Å: Chain A: Q.25, N.27, D.88, H.89, V.183, H.184, G.185, H.212, G.213, G.214, T.215, N.234, V.235, N.236, T.237 Ligands: ZN.1, NA.5 14 PLIP interactions: 14 interactions with chain A Hydrogen bonds: A:G.185, A:G.213, A:G.214, A:T.215, A:T.215, A:T.215, A:N.234, A:N.236, A:T.237, A:T.237, A:T.237 Water bridges: A:D.88, A:D.88, A:N.236 13P.16: 17 residues within 4Å: Chain B: Q.25, N.27, D.88, H.89, V.183, H.184, G.185, H.212, G.213, G.214, T.215, N.234, V.235, N.236, T.237 Ligands: ZN.11, NA.15 13 PLIP interactions: 13 interactions with chain B Hydrogen bonds: B:Q.25, B:D.88, B:G.185, B:G.213, B:G.214, B:T.215, B:T.215, B:T.215, B:T.215, B:N.234, B:N.236, B:T.237 Water bridges: B:N.236 13P.24: 17 residues within 4Å: Chain C: Q.25, N.27, D.88, H.89, V.183, H.184, G.185, H.212, G.213, G.214, T.215, N.234, V.235, N.236, T.237 Ligands: ZN.19, NA.23 13 PLIP interactions: 13 interactions with chain C Hydrogen bonds: C:G.185, C:G.213, C:G.214, C:T.215, C:T.215, C:T.215, C:N.234, C:N.236, C:T.237, C:T.237, C:T.237 Water bridges: C:N.27, C:N.236 13P.34: 17 residues within 4Å: Chain D: Q.25, N.27, D.88, H.89, V.183, H.184, G.185, H.212, G.213, G.214, T.215, N.234, V.235, N.236, T.237 Ligands: ZN.29, NA.33 15 PLIP interactions: 15 interactions with chain D Hydrogen bonds: D:Q.25, D:D.88, D:G.185, D:H.212, D:G.213, D:G.214, D:T.215, D:T.215, D:T.215, D:T.215, D:N.234, D:N.236, D:T.237, D:T.237 Water bridges: D:N.236

8 x ACT: ACETATE ION(Non-functional Binders)

ACT.8: 3 residues within 4Å: Chain A: Y.158, N.192, E.197 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Y.158, A:N.192, A:E.197 Water bridges: A:F.195, A:F.195 ACT.9: 4 residues within 4Å: Chain A: E.75, E.76, N.78 Chain B: K.64 3 PLIP interactions: 1 interactions with chain B, 2 interactions with chain A Salt bridges: B:K.64 Hydrogen bonds: A:E.75, A:N.78 ACT.17: 3 residues within 4Å: Chain B: E.44, N.285, G.286 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.285 ACT.18: 3 residues within 4Å: Chain A: K.64 Chain B: E.75, E.76 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:K.64 ACT.26: 3 residues within 4Å: Chain C: Y.158, N.192, E.197 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:N.192, C:E.197 Water bridges: C:F.195, C:F.195 ACT.27: 4 residues within 4Å: Chain C: E.75, E.76, N.78 Chain D: K.64 2 PLIP interactions: 1 interactions with chain D, 1 interactions with chain C Salt bridges: D:K.64 Hydrogen bonds: C:N.78 ACT.35: 3 residues within 4Å: Chain D: E.44, N.285, G.286 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:N.285 ACT.36: 3 residues within 4Å: Chain C: K.64 Chain D: E.75, E.76 3 PLIP interactions: 2 interactions with chain D, 1 interactions with chain C Hydrogen bonds: D:E.75 Water bridges: D:E.76 Salt bridges: C:K.64

Links

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Citation

Tan, K. et al., The crystal structure of fructose 1,6-bisphosphate aldolase from Bacillus anthracis str. 'Ames Ancestor'. To be Published

Release Date

2011-01-26

Peptides

Fructose-bisphosphate aldolase, class II: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Fructose-bisphosphate aldolase, class II

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