SMTL ID : 3q9l.1 (2 other biounits)

The structure of the dimeric E.coli MinD-ATP complex

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.34 Å

Oligo State

homo-dimer

Ligands

2 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 2 residues within 4Å: Chain A: T.17 Ligands: ATP.2 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:T.17, H2O.1, H2O.1, H2O.1 MG.3: 2 residues within 4Å: Chain B: T.17 Ligands: ATP.4 4 PLIP interactions: 1 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:T.17, H2O.6, H2O.6, H2O.6

2 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.2: 19 residues within 4Å: Chain A: G.12, G.13, V.14, G.15, K.16, T.17, T.18, N.45, A.123, R.182, I.211, P.212, E.213, D.214, V.217 Chain B: K.11, G.12, E.146 Ligands: MG.1 25 PLIP interactions: 19 interactions with chain A, 6 interactions with chain B Hydrogen bonds: A:G.13, A:V.14, A:G.15, A:K.16, A:T.17, A:T.18, A:T.18, A:N.45, A:R.182, A:R.182, A:P.212, A:D.214, B:G.12 Water bridges: A:T.17, A:T.17, A:A.123, A:A.123, A:L.218, B:K.11, B:R.187 Salt bridges: A:K.16, A:K.16, B:K.11, B:K.11, B:K.11 ATP.4: 19 residues within 4Å: Chain A: K.11, G.12, E.146 Chain B: G.12, G.13, V.14, G.15, K.16, T.17, T.18, N.45, A.123, R.182, I.211, P.212, E.213, D.214, V.217 Ligands: MG.3 23 PLIP interactions: 16 interactions with chain B, 7 interactions with chain A Hydrogen bonds: B:G.13, B:V.14, B:G.15, B:K.16, B:T.17, B:T.18, B:T.18, B:N.45, B:R.182, B:R.182, B:P.212, B:D.214, A:G.12 Water bridges: B:A.123, B:L.218, A:G.10, A:K.11, A:K.11 Salt bridges: B:K.16, B:K.16, A:K.11, A:K.11, A:K.11

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wu, W. et al., Determination of the structure of the MinD-ATP complex reveals the orientation of MinD on the membrane and the relative location of the binding sites for MinE and MinC. Mol.Microbiol. (2011)

Release Date

2011-01-26

Peptides

Septum site-determining protein minD: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Septum site-determining protein minD

Related Entries With Identical Sequence