SMTL ID : 3qae.1

3-hydroxy-3-methylglutaryl-coenzyme A reductase of Streptococcus pneumoniae

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-dimer

Ligands

2 x CIT: CITRIC ACID(Non-functional Binders)

CIT.1: 12 residues within 4Å: Chain A: E.115, R.291, T.294, K.297, G.298, N.301, A.399, L.403 Chain B: I.243 Ligands: NA.6, NA.7, NA.14 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.301 Water bridges: A:E.115, A:E.115 Salt bridges: A:R.291, A:K.297 CIT.30: 12 residues within 4Å: Chain A: I.243 Chain B: E.115, R.291, T.294, K.297, G.298, N.301, A.399, L.403 Ligands: NA.35, NA.36, NA.43 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:N.301 Salt bridges: B:R.291, B:K.297

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 8 residues within 4Å: Chain A: Y.178, R.184, A.214, G.216, A.217, N.218, M.219, K.359 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:R.184, A:R.184, A:G.216, A:N.218, A:M.219 Water bridges: A:A.217 GOL.31: 8 residues within 4Å: Chain B: Y.178, R.184, A.214, G.216, A.217, N.218, M.219, K.359 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:Y.178, B:R.184, B:R.184, B:G.216, B:N.218, B:M.219 Water bridges: B:A.217

54 x NA: SODIUM ION(Non-functional Binders)

NA.3: 6 residues within 4Å: Chain A: V.139, Q.141, R.142, S.251, V.253 Ligands: NA.21 Ligand excluded by PLIP NA.4: 7 residues within 4Å: Chain A: F.90, L.92 Chain B: I.308, G.311, S.362 Ligands: NA.22, NA.54 Ligand excluded by PLIP NA.5: 6 residues within 4Å: Chain A: A.316, I.317, G.320, A.321, P.353 Ligands: NA.16 Ligand excluded by PLIP NA.6: 5 residues within 4Å: Chain A: A.121, Q.395, A.399 Ligands: CIT.1, NA.7 Ligand excluded by PLIP NA.7: 2 residues within 4Å: Ligands: CIT.1, NA.6 Ligand excluded by PLIP NA.8: 7 residues within 4Å: Chain A: Y.290, R.291, T.294 Chain B: Q.147, I.243, L.244, S.245 Ligand excluded by PLIP NA.9: 8 residues within 4Å: Chain A: T.113, E.115, P.116, S.117, V.118, V.119 Chain B: S.83, E.84 Ligand excluded by PLIP NA.10: 1 residues within 4Å: Chain A: S.256 Ligand excluded by PLIP NA.11: 5 residues within 4Å: Chain A: Q.141, T.249, D.250, S.251, L.252 Ligand excluded by PLIP NA.12: 6 residues within 4Å: Chain A: K.297, F.300, E.318, H.322 Chain B: R.315, A.319 Ligand excluded by PLIP NA.13: 7 residues within 4Å: Chain A: P.93, S.95, Y.111, V.112, T.113, V.119 Chain B: S.83 Ligand excluded by PLIP NA.14: 6 residues within 4Å: Chain A: H.295, G.298, I.299, N.396, A.399 Ligands: CIT.1 Ligand excluded by PLIP NA.15: 6 residues within 4Å: Chain A: S.282, A.285, Q.286, H.295, G.333, S.335 Ligand excluded by PLIP NA.16: 7 residues within 4Å: Chain A: N.246, A.248, A.316, G.320, P.355 Ligands: NA.5, NA.24 Ligand excluded by PLIP NA.17: 5 residues within 4Å: Chain A: Y.47, L.68, D.71 Chain B: V.87, G.88 Ligand excluded by PLIP NA.18: 7 residues within 4Å: Chain A: R.142, Q.143, M.144, V.209, D.210, T.211, Q.212 Ligand excluded by PLIP NA.19: 4 residues within 4Å: Chain A: S.67, E.72, P.367, R.368 Ligand excluded by PLIP NA.20: 4 residues within 4Å: Chain A: M.144, I.145, S.245, A.248 Ligand excluded by PLIP NA.21: 5 residues within 4Å: Chain A: R.142, M.354, A.381, A.385 Ligands: NA.3 Ligand excluded by PLIP NA.22: 7 residues within 4Å: Chain A: E.114 Chain B: L.307, I.308, G.311, N.312, W.314 Ligands: NA.4 Ligand excluded by PLIP NA.23: 5 residues within 4Å: Chain A: A.281, A.285, R.291, H.295, L.400 Ligand excluded by PLIP NA.24: 4 residues within 4Å: Chain A: N.246, A.316, P.355 Ligands: NA.16 Ligand excluded by PLIP NA.25: 6 residues within 4Å: Chain A: S.362, N.366, V.369 Chain B: L.92, E.114 Ligands: NA.33 Ligand excluded by PLIP NA.26: 4 residues within 4Å: Chain A: S.43, R.50 Chain B: E.84, N.85 Ligand excluded by PLIP NA.27: 3 residues within 4Å: Chain A: D.80 Chain B: S.46, Y.47 Ligand excluded by PLIP NA.28: 3 residues within 4Å: Chain A: S.46, Y.47, Q.48 Ligand excluded by PLIP NA.29: 1 residues within 4Å: Chain A: N.378 Ligand excluded by PLIP NA.32: 6 residues within 4Å: Chain B: V.139, Q.141, R.142, S.251, V.253 Ligands: NA.50 Ligand excluded by PLIP NA.33: 7 residues within 4Å: Chain A: I.308, G.311, S.362 Chain B: F.90, L.92 Ligands: NA.25, NA.51 Ligand excluded by PLIP NA.34: 6 residues within 4Å: Chain B: A.316, I.317, G.320, A.321, P.353 Ligands: NA.45 Ligand excluded by PLIP NA.35: 5 residues within 4Å: Chain B: A.121, Q.395, A.399 Ligands: CIT.30, NA.36 Ligand excluded by PLIP NA.36: 2 residues within 4Å: Ligands: CIT.30, NA.35 Ligand excluded by PLIP NA.37: 7 residues within 4Å: Chain A: Q.147, I.243, L.244, S.245 Chain B: Y.290, R.291, T.294 Ligand excluded by PLIP NA.38: 8 residues within 4Å: Chain A: S.83, E.84 Chain B: T.113, E.115, P.116, S.117, V.118, V.119 Ligand excluded by PLIP NA.39: 1 residues within 4Å: Chain B: S.256 Ligand excluded by PLIP NA.40: 5 residues within 4Å: Chain B: Q.141, T.249, D.250, S.251, L.252 Ligand excluded by PLIP NA.41: 6 residues within 4Å: Chain A: R.315, A.319 Chain B: K.297, F.300, E.318, H.322 Ligand excluded by PLIP NA.42: 7 residues within 4Å: Chain A: S.83 Chain B: P.93, S.95, Y.111, V.112, T.113, V.119 Ligand excluded by PLIP NA.43: 6 residues within 4Å: Chain B: H.295, G.298, I.299, N.396, A.399 Ligands: CIT.30 Ligand excluded by PLIP NA.44: 6 residues within 4Å: Chain B: S.282, A.285, Q.286, H.295, G.333, S.335 Ligand excluded by PLIP NA.45: 7 residues within 4Å: Chain B: N.246, A.248, A.316, G.320, P.355 Ligands: NA.34, NA.53 Ligand excluded by PLIP NA.46: 5 residues within 4Å: Chain A: V.87, G.88 Chain B: Y.47, L.68, D.71 Ligand excluded by PLIP NA.47: 7 residues within 4Å: Chain B: R.142, Q.143, M.144, V.209, D.210, T.211, Q.212 Ligand excluded by PLIP NA.48: 4 residues within 4Å: Chain B: S.67, E.72, P.367, R.368 Ligand excluded by PLIP NA.49: 4 residues within 4Å: Chain B: M.144, I.145, S.245, A.248 Ligand excluded by PLIP NA.50: 5 residues within 4Å: Chain B: R.142, M.354, A.381, A.385 Ligands: NA.32 Ligand excluded by PLIP NA.51: 7 residues within 4Å: Chain A: L.307, I.308, G.311, N.312, W.314 Chain B: E.114 Ligands: NA.33 Ligand excluded by PLIP NA.52: 5 residues within 4Å: Chain B: A.281, A.285, R.291, H.295, L.400 Ligand excluded by PLIP NA.53: 4 residues within 4Å: Chain B: N.246, A.316, P.355 Ligands: NA.45 Ligand excluded by PLIP NA.54: 6 residues within 4Å: Chain A: L.92, E.114 Chain B: S.362, N.366, V.369 Ligands: NA.4 Ligand excluded by PLIP NA.55: 4 residues within 4Å: Chain A: E.84, N.85 Chain B: S.43, R.50 Ligand excluded by PLIP NA.56: 3 residues within 4Å: Chain A: S.46, Y.47 Chain B: D.80 Ligand excluded by PLIP NA.57: 3 residues within 4Å: Chain B: S.46, Y.47, Q.48 Ligand excluded by PLIP NA.58: 1 residues within 4Å: Chain B: N.378 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, L., 3-hydroxy-3-methylglutaryl-coenzyme A reductase of Streptococcus pneumoniae. To be Published

Release Date

2011-01-26

Peptides

3-hydroxy-3-methylglutaryl-coenzyme a reductase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

3-hydroxy-3-methylglutaryl-coenzyme a reductase

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