SMTL ID : 3qau.1

3-Hydroxy-3-MethylGlutaryl-Coenzyme A Reductase from Streptococcus pneumoniae

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-dimer

Ligands

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 5 residues within 4Å: Chain A: R.184, Q.212, E.213, A.214, K.359 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.213 Water bridges: A:R.184, A:Q.212 GOL.2: 7 residues within 4Å: Chain A: M.215, A.217, L.244, N.246, D.313 Chain B: K.297 Ligands: NA.62 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A Water bridges: B:E.115, B:T.294 Hydrogen bonds: A:N.246 GOL.34: 5 residues within 4Å: Chain B: R.184, Q.212, E.213, A.214, K.359 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:E.213 Water bridges: B:R.184, B:Q.212 GOL.35: 7 residues within 4Å: Chain A: K.297 Chain B: M.215, A.217, L.244, N.246, D.313 Ligands: NA.29 4 PLIP interactions: 2 interactions with chain A, 2 interactions with chain B Water bridges: A:E.115, A:T.294 Hydrogen bonds: B:N.246, B:D.313

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 5 residues within 4Å: Chain A: A.214, M.215, G.216, A.217, N.218 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:G.216, A:A.217, A:N.218 Water bridges: A:M.215, A:M.215, A:M.219, A:M.219 SO4.36: 5 residues within 4Å: Chain B: A.214, M.215, G.216, A.217, N.218 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:G.216, B:A.217, B:N.218 Water bridges: B:M.215, B:M.215, B:M.219, B:M.219

60 x NA: SODIUM ION(Non-functional Binders)

NA.4: 5 residues within 4Å: Chain A: A.281, A.285, R.291, H.295, L.400 Ligand excluded by PLIP NA.5: 7 residues within 4Å: Chain A: L.101, V.102, N.103, G.104, G.133, G.134, F.135 Ligand excluded by PLIP NA.6: 5 residues within 4Å: Chain A: Q.141, T.249, D.250, S.251, L.252 Ligand excluded by PLIP NA.7: 8 residues within 4Å: Chain A: Q.143, M.144, I.145, A.248, T.249, D.250, S.251 Ligands: NA.18 Ligand excluded by PLIP NA.8: 8 residues within 4Å: Chain A: T.113, E.115, P.116, S.117, V.118, V.119 Chain B: S.83, E.84 Ligand excluded by PLIP NA.9: 6 residues within 4Å: Chain A: E.72, Q.73, R.368 Chain B: T.89, F.90 Ligands: NA.13 Ligand excluded by PLIP NA.10: 6 residues within 4Å: Chain A: A.316, I.317, G.320, A.321, P.353 Ligands: NA.31 Ligand excluded by PLIP NA.11: 5 residues within 4Å: Chain A: E.114 Chain B: G.311, N.312, W.314 Ligands: NA.16 Ligand excluded by PLIP NA.12: 5 residues within 4Å: Chain A: R.142, Q.143, M.144, T.211, Q.212 Ligand excluded by PLIP NA.13: 7 residues within 4Å: Chain A: Q.73, M.74, N.366, R.368 Chain B: F.90, S.91 Ligands: NA.9 Ligand excluded by PLIP NA.14: 5 residues within 4Å: Chain A: S.362, N.366 Chain B: F.90, L.92 Ligands: NA.49 Ligand excluded by PLIP NA.15: 5 residues within 4Å: Chain A: H.295, G.298, I.299, N.396, A.399 Ligand excluded by PLIP NA.16: 6 residues within 4Å: Chain A: F.90, L.92 Chain B: I.308, G.311 Ligands: NA.11, NA.47 Ligand excluded by PLIP NA.17: 3 residues within 4Å: Chain A: A.121, Q.395, A.399 Ligand excluded by PLIP NA.18: 5 residues within 4Å: Chain A: M.144, I.145, S.245, A.248 Ligands: NA.7 Ligand excluded by PLIP NA.19: 4 residues within 4Å: Chain A: T.358, H.373, N.378, P.379 Ligand excluded by PLIP NA.20: 7 residues within 4Å: Chain A: V.139, Q.141, R.142, S.251, V.253, M.354 Ligands: NA.32 Ligand excluded by PLIP NA.21: 7 residues within 4Å: Chain A: K.297, F.300, E.318, H.322 Chain B: R.315, E.318, A.319 Ligand excluded by PLIP NA.22: 5 residues within 4Å: Chain A: S.67, E.72, P.367, R.368 Ligands: NA.28 Ligand excluded by PLIP NA.23: 4 residues within 4Å: Chain A: T.136, S.256, C.257, R.258 Ligand excluded by PLIP NA.24: 6 residues within 4Å: Chain A: S.282, A.285, Q.286, H.295, G.333, S.335 Ligand excluded by PLIP NA.25: 7 residues within 4Å: Chain A: P.93, S.95, Y.111, V.112, T.113, V.119 Chain B: S.83 Ligand excluded by PLIP NA.26: 6 residues within 4Å: Chain A: E.99, V.100, L.101, S.126, K.130, F.135 Ligand excluded by PLIP NA.27: 6 residues within 4Å: Chain A: D.80, S.83, E.84, N.85, V.86 Chain B: R.50 Ligand excluded by PLIP NA.28: 5 residues within 4Å: Chain A: R.64, S.67, P.367, L.371 Ligands: NA.22 Ligand excluded by PLIP NA.29: 4 residues within 4Å: Chain A: E.115, K.297, N.301 Ligands: GOL.35 Ligand excluded by PLIP NA.30: 4 residues within 4Å: Chain A: Y.107, T.108, L.375, L.376 Ligand excluded by PLIP NA.31: 6 residues within 4Å: Chain A: N.246, A.248, A.316, G.320, P.355 Ligands: NA.10 Ligand excluded by PLIP NA.32: 4 residues within 4Å: Chain A: R.142, M.354, A.385 Ligands: NA.20 Ligand excluded by PLIP NA.33: 2 residues within 4Å: Chain A: T.249, D.250 Ligand excluded by PLIP NA.37: 5 residues within 4Å: Chain B: A.281, A.285, R.291, H.295, L.400 Ligand excluded by PLIP NA.38: 7 residues within 4Å: Chain B: L.101, V.102, N.103, G.104, G.133, G.134, F.135 Ligand excluded by PLIP NA.39: 5 residues within 4Å: Chain B: Q.141, T.249, D.250, S.251, L.252 Ligand excluded by PLIP NA.40: 8 residues within 4Å: Chain B: Q.143, M.144, I.145, A.248, T.249, D.250, S.251 Ligands: NA.51 Ligand excluded by PLIP NA.41: 8 residues within 4Å: Chain A: S.83, E.84 Chain B: T.113, E.115, P.116, S.117, V.118, V.119 Ligand excluded by PLIP NA.42: 6 residues within 4Å: Chain A: T.89, F.90 Chain B: E.72, Q.73, R.368 Ligands: NA.46 Ligand excluded by PLIP NA.43: 6 residues within 4Å: Chain B: A.316, I.317, G.320, A.321, P.353 Ligands: NA.64 Ligand excluded by PLIP NA.44: 5 residues within 4Å: Chain A: G.311, N.312, W.314 Chain B: E.114 Ligands: NA.49 Ligand excluded by PLIP NA.45: 5 residues within 4Å: Chain B: R.142, Q.143, M.144, T.211, Q.212 Ligand excluded by PLIP NA.46: 7 residues within 4Å: Chain A: F.90, S.91 Chain B: Q.73, M.74, N.366, R.368 Ligands: NA.42 Ligand excluded by PLIP NA.47: 5 residues within 4Å: Chain A: F.90, L.92 Chain B: S.362, N.366 Ligands: NA.16 Ligand excluded by PLIP NA.48: 5 residues within 4Å: Chain B: H.295, G.298, I.299, N.396, A.399 Ligand excluded by PLIP NA.49: 6 residues within 4Å: Chain A: I.308, G.311 Chain B: F.90, L.92 Ligands: NA.14, NA.44 Ligand excluded by PLIP NA.50: 3 residues within 4Å: Chain B: A.121, Q.395, A.399 Ligand excluded by PLIP NA.51: 5 residues within 4Å: Chain B: M.144, I.145, S.245, A.248 Ligands: NA.40 Ligand excluded by PLIP NA.52: 4 residues within 4Å: Chain B: T.358, H.373, N.378, P.379 Ligand excluded by PLIP NA.53: 7 residues within 4Å: Chain B: V.139, Q.141, R.142, S.251, V.253, M.354 Ligands: NA.65 Ligand excluded by PLIP NA.54: 7 residues within 4Å: Chain A: R.315, E.318, A.319 Chain B: K.297, F.300, E.318, H.322 Ligand excluded by PLIP NA.55: 5 residues within 4Å: Chain B: S.67, E.72, P.367, R.368 Ligands: NA.61 Ligand excluded by PLIP NA.56: 4 residues within 4Å: Chain B: T.136, S.256, C.257, R.258 Ligand excluded by PLIP NA.57: 6 residues within 4Å: Chain B: S.282, A.285, Q.286, H.295, G.333, S.335 Ligand excluded by PLIP NA.58: 7 residues within 4Å: Chain A: S.83 Chain B: P.93, S.95, Y.111, V.112, T.113, V.119 Ligand excluded by PLIP NA.59: 6 residues within 4Å: Chain B: E.99, V.100, L.101, S.126, K.130, F.135 Ligand excluded by PLIP NA.60: 6 residues within 4Å: Chain A: R.50 Chain B: D.80, S.83, E.84, N.85, V.86 Ligand excluded by PLIP NA.61: 5 residues within 4Å: Chain B: R.64, S.67, P.367, L.371 Ligands: NA.55 Ligand excluded by PLIP NA.62: 4 residues within 4Å: Chain B: E.115, K.297, N.301 Ligands: GOL.2 Ligand excluded by PLIP NA.63: 4 residues within 4Å: Chain B: Y.107, T.108, L.375, L.376 Ligand excluded by PLIP NA.64: 6 residues within 4Å: Chain B: N.246, A.248, A.316, G.320, P.355 Ligands: NA.43 Ligand excluded by PLIP NA.65: 4 residues within 4Å: Chain B: R.142, M.354, A.385 Ligands: NA.53 Ligand excluded by PLIP NA.66: 2 residues within 4Å: Chain B: T.249, D.250 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, L., 3-Hydroxy-3-MethylGlutaryl-Coenzyme A Reductase from Streptococcus pneumoniae. To be Published

Release Date

2011-01-26

Peptides

3-hydroxy-3-methylglutaryl-coenzyme a reductase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

3-hydroxy-3-methylglutaryl-coenzyme a reductase

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