SMTL ID : 3qby.1

Crystal structure of the PWWP domain of human Hepatoma-derived growth factor 2

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

hetero-3-1-mer

Ligands

20 x UNX: UNKNOWN ATOM OR ION(Non-functional Binders)

UNX.1: 1 residues within 4Å: Chain A: R.25 Ligand excluded by PLIP UNX.2: 4 residues within 4Å: Chain A: G.77, N.79, E.80 Ligands: UNX.3 Ligand excluded by PLIP UNX.3: 2 residues within 4Å: Chain A: N.79 Ligands: UNX.2 Ligand excluded by PLIP UNX.4: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP UNX.5: 1 residues within 4Å: Chain A: T.51 Ligand excluded by PLIP UNX.6: 2 residues within 4Å: Chain A: Y.62, Q.86 Ligand excluded by PLIP UNX.7: 2 residues within 4Å: Chain A: P.20, H.21 Ligand excluded by PLIP UNX.8: 1 residues within 4Å: Chain A: K.76 Ligand excluded by PLIP UNX.9: 2 residues within 4Å: Chain A: P.20, N.73 Ligand excluded by PLIP UNX.10: 2 residues within 4Å: Chain A: K.15, G.18 Ligand excluded by PLIP UNX.11: 1 residues within 4Å: Chain A: S.92 Ligand excluded by PLIP UNX.12: 4 residues within 4Å: Chain A: H.4, A.5, K.7, D.10 Ligand excluded by PLIP UNX.13: 2 residues within 4Å: Chain A: Y.62, D.63 Ligand excluded by PLIP UNX.16: 1 residues within 4Å: Chain B: P.61 Ligand excluded by PLIP UNX.17: 2 residues within 4Å: Chain B: S.92, S.94 Ligand excluded by PLIP UNX.18: 2 residues within 4Å: Chain B: H.49, Y.93 Ligand excluded by PLIP UNX.19: 3 residues within 4Å: Chain B: G.9, R.25, H.90 Ligand excluded by PLIP UNX.20: 5 residues within 4Å: Chain A: T.51 Chain C: G.18, Y.19, P.20, R.75 Ligand excluded by PLIP UNX.21: 3 residues within 4Å: Chain C: W.22, T.48, E.50 Ligand excluded by PLIP UNX.22: 2 residues within 4Å: Chain C: M.16, K.17 Ligand excluded by PLIP

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.14: 6 residues within 4Å: Chain A: K.35 Chain B: K.76, G.77, F.78, N.79, E.80 5 PLIP interactions: 3 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:G.77, B:N.79, B:E.80 Water bridges: A:K.35 Salt bridges: A:K.35 SO4.15: 3 residues within 4Å: Chain B: K.15, K.17, G.18 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:G.18 Salt bridges: B:K.15

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wu, H. et al., Structural and Histone Binding Ability Characterizations of Human PWWP Domains. Plos One (2011)

Release Date

2011-02-09

Peptides

Hepatoma-derived growth factor-related protein 2: ABC
H4K20me3 Histone H4 Peptide: D

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
H

Hepatoma-derived growth factor-related protein 2

H4K20me3 Histone H4 Peptide

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