SMTL ID : 3qc0.1

Crystal structure of a sugar isomerase (SMc04130) from SINORHIZOBIUM MELILOTI 1021 at 1.45 A resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.45 Å

Oligo State

homo-dimer

Ligands

2 x UNL: UNKNOWN LIGAND

UNL.1: 14 residues within 4Å: Chain A: W.38, R.66, F.69, V.103, E.142, L.144, Y.148, D.177, H.180, L.216, R.219, E.248, F.250 Ligands: ZN.2 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:R.66, A:R.66, A:R.66, A:Y.148, A:R.219 Water bridges: A:R.66, A:Y.148 UNL.13: 14 residues within 4Å: Chain B: W.38, R.66, F.69, V.103, E.142, L.144, Y.148, D.177, H.180, L.216, R.219, E.248, F.250 Ligands: ZN.14 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:R.66, B:R.66, B:R.66, B:Y.148, B:R.219 Water bridges: B:R.66

2 x ZN: ZINC ION(Non-covalent)

ZN.2: 5 residues within 4Å: Chain A: E.142, D.177, H.204, E.248 Ligands: UNL.1 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.142, A:D.177, A:H.204, A:E.248, H2O.1 ZN.14: 5 residues within 4Å: Chain B: E.142, D.177, H.204, E.248 Ligands: UNL.13 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:E.142, B:D.177, B:H.204, B:E.248, H2O.11

20 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)

PG4.3: 4 residues within 4Å: Chain A: G.195, K.196, A.238, A.239 Ligand excluded by PLIP PG4.4: 6 residues within 4Å: Chain A: E.16, Q.17, W.256, K.257, R.258, P.259 Ligand excluded by PLIP PG4.5: 8 residues within 4Å: Chain A: P.73, P.108, G.109, G.110, S.111, A.116, M.120 Ligands: PG4.7 Ligand excluded by PLIP PG4.6: 6 residues within 4Å: Chain A: L.107, P.108, G.109, G.110, S.111 Chain B: V.226 Ligand excluded by PLIP PG4.7: 7 residues within 4Å: Chain A: N.113, D.115, A.116, R.119, M.120, E.123 Ligands: PG4.5 Ligand excluded by PLIP PG4.8: 5 residues within 4Å: Chain A: P.138, G.171, V.172, M.197, K.198 Ligand excluded by PLIP PG4.9: 4 residues within 4Å: Chain A: N.189, A.192, R.193, K.196 Ligand excluded by PLIP PG4.10: 7 residues within 4Å: Chain A: K.213, D.214, M.215 Chain B: K.213, D.214, M.215 Ligands: PG4.22 Ligand excluded by PLIP PG4.11: 6 residues within 4Å: Chain A: R.15, E.16, Q.17, C.18, G.19, E.22 Ligand excluded by PLIP PG4.12: 10 residues within 4Å: Chain A: V.4, E.5, G.6, L.7, G.31, I.32, T.33, A.34, H.242, A.244 Ligand excluded by PLIP PG4.15: 4 residues within 4Å: Chain B: G.195, K.196, A.238, A.239 Ligand excluded by PLIP PG4.16: 6 residues within 4Å: Chain B: E.16, Q.17, W.256, K.257, R.258, P.259 Ligand excluded by PLIP PG4.17: 8 residues within 4Å: Chain B: P.73, P.108, G.109, G.110, S.111, A.116, M.120 Ligands: PG4.19 Ligand excluded by PLIP PG4.18: 6 residues within 4Å: Chain A: V.226 Chain B: L.107, P.108, G.109, G.110, S.111 Ligand excluded by PLIP PG4.19: 7 residues within 4Å: Chain B: N.113, D.115, A.116, R.119, M.120, E.123 Ligands: PG4.17 Ligand excluded by PLIP PG4.20: 5 residues within 4Å: Chain B: P.138, G.171, V.172, M.197, K.198 Ligand excluded by PLIP PG4.21: 4 residues within 4Å: Chain B: N.189, A.192, R.193, K.196 Ligand excluded by PLIP PG4.22: 7 residues within 4Å: Chain A: K.213, D.214, M.215 Chain B: K.213, D.214, M.215 Ligands: PG4.10 Ligand excluded by PLIP PG4.23: 6 residues within 4Å: Chain B: R.15, E.16, Q.17, C.18, G.19, E.22 Ligand excluded by PLIP PG4.24: 10 residues within 4Å: Chain B: V.4, E.5, G.6, L.7, G.31, I.32, T.33, A.34, H.242, A.244 Ligand excluded by PLIP

Links

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Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of a sugar isomerase (SMc04130) from SINORHIZOBIUM MELILOTI 1021 at 1.45 A resolution. To be published

Release Date

2011-04-06

Peptides

sugar isomerase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

sugar isomerase