SMTL ID : 3qct.1

Crystal structure of the humanized apo LT3015 anti-lysophosphatidic acid antibody Fab fragment

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.15 Å

Oligo State

hetero-1-1-mer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 10 residues within 4Å: Chain A: Y.102, Y.103, G.104, S.105, G.106, N.107, Y.108 Chain B: N.35, Y.37, K.55 8 PLIP interactions: 5 interactions with chain A, 3 interactions with chain B Hydrogen bonds: A:G.104, A:S.105, A:G.106, A:N.107, A:Y.108, B:Y.37 Water bridges: B:K.55 Salt bridges: B:K.55 SO4.2: 6 residues within 4Å: Chain A: R.98, G.101, Y.102, S.105, N.107, F.109 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.98, A:Y.102, A:S.105, A:N.107

1 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.3: 5 residues within 4Å: Chain A: L.33, Y.103 Chain B: H.31, T.97, F.99 1 PLIP interactions: 1 interactions with chain B Water bridges: B:F.99

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fleming, J.K. et al., Biochemical and structural characterization of lysophosphatidic Acid binding by a humanized monoclonal antibody. J.Mol.Biol. (2011)

Release Date

2011-03-30

Peptides

LT3015 antibody Fab fragment, heavy chain: A
LT3015 antibody Fab fragment, light chain: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
H

B
L

LT3015 antibody Fab fragment, heavy chain

LT3015 antibody Fab fragment, light chain

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