- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.50 Å
- Oligo State
- monomer
- Ligands
- 1 x RET: RETINAL(Covalent)
- 1 x BOG: octyl beta-D-glucopyranoside(Non-covalent)
- 29 x LFA: EICOSANE(Non-covalent)(Non-functional Binders)
LFA.3: 8 residues within 4Å:- Chain A: E.33, Y.36, Y.37, L.40, I.156, A.212, L.213, A.216
Ligand excluded by PLIPLFA.4: 5 residues within 4Å:- Chain A: F.113, A.114, M.117
- Ligands: LFA.8, L2P.18
Ligand excluded by PLIPLFA.5: 4 residues within 4Å:- Chain A: V.53
- Ligands: L2P.18, LFA.27, LFA.33
Ligand excluded by PLIPLFA.6: 3 residues within 4Å:- Chain A: I.77, T.106
- Ligands: L2P.18
Ligand excluded by PLIPLFA.7: 4 residues within 4Å:- Chain A: V.138, Y.139, V.142, G.143
Ligand excluded by PLIPLFA.8: 3 residues within 4Å:- Chain A: A.114, M.117
- Ligands: LFA.4
Ligand excluded by PLIPLFA.9: 5 residues within 4Å:- Chain A: R.35, T.39, G.42, L.82
- Ligands: LFA.25
Ligand excluded by PLIPLFA.10: 2 residues within 4Å:- Chain A: I.173
- Ligands: LFA.12
Ligand excluded by PLIPLFA.11: 1 residues within 4Å:- Chain A: W.24
Ligand excluded by PLIPLFA.12: 4 residues within 4Å:- Chain A: F.176, L.187
- Ligands: LFA.10, LFA.32
Ligand excluded by PLIPLFA.13: 7 residues within 4Å:- Chain A: W.9, L.16, V.52, L.56
- Ligands: LFA.19, LFA.22, LFA.27
Ligand excluded by PLIPLFA.14: 6 residues within 4Å:- Chain A: T.5, W.9, A.55, L.56, G.57
- Ligands: LFA.22
Ligand excluded by PLIPLFA.15: 6 residues within 4Å:- Chain A: I.121, Y.124, A.125, G.128, V.132
- Ligands: L2P.21
Ligand excluded by PLIPLFA.16: 7 residues within 4Å:- Chain A: Y.199, V.203, G.207, F.210, I.211, D.214
- Ligands: LFA.28
Ligand excluded by PLIPLFA.17: 0 residues within 4Å:- (No contacts)
Ligand excluded by PLIPLFA.19: 7 residues within 4Å:- Chain A: L.16, T.19, G.45, V.49
- Ligands: LFA.13, L2P.18, LFA.27
Ligand excluded by PLIPLFA.20: 3 residues within 4Å:- Chain A: T.6, W.9
- Ligands: LFA.22
Ligand excluded by PLIPLFA.22: 5 residues within 4Å:- Chain A: W.9, I.13
- Ligands: LFA.13, LFA.14, LFA.20
Ligand excluded by PLIPLFA.23: 0 residues within 4Å:- (No contacts)
Ligand excluded by PLIPLFA.24: 3 residues within 4Å:- Chain A: L.82, Y.85
- Ligands: LFA.26
Ligand excluded by PLIPLFA.25: 6 residues within 4Å:- Chain A: A.23, G.26, V.41, G.42
- Ligands: LFA.9, L2P.18
Ligand excluded by PLIPLFA.26: 3 residues within 4Å:- Chain A: L.93, F.98
- Ligands: LFA.24
Ligand excluded by PLIPLFA.27: 7 residues within 4Å:- Chain A: V.52, L.56, V.58
- Ligands: LFA.5, LFA.13, LFA.19, LFA.33
Ligand excluded by PLIPLFA.28: 9 residues within 4Å:- Chain A: L.7, L.10, G.14, A.195, V.198, Y.199, L.202
- Ligands: LFA.16, LFA.29
Ligand excluded by PLIPLFA.29: 5 residues within 4Å:- Chain A: G.3, T.6, L.7
- Ligands: LFA.28, LFA.30
Ligand excluded by PLIPLFA.30: 1 residues within 4Å:- Ligands: LFA.29
Ligand excluded by PLIPLFA.31: 2 residues within 4Å:- Chain A: S.95, R.96
Ligand excluded by PLIPLFA.32: 5 residues within 4Å:- Chain A: F.176, L.180, V.185, L.187
- Ligands: LFA.12
Ligand excluded by PLIPLFA.33: 4 residues within 4Å:- Chain A: V.58
- Ligands: LFA.5, L2P.18, LFA.27
Ligand excluded by PLIP- 2 x L2P: 2,3-DI-PHYTANYL-GLYCEROL(Non-covalent)
L2P.18: 19 residues within 4Å:- Chain A: G.45, I.46, V.49, A.50, V.58, G.59, V.61, P.71, I.74, D.75, I.77, L.78, F.113
- Ligands: LFA.4, LFA.5, LFA.6, LFA.19, LFA.25, LFA.33
12 PLIP interactions:12 interactions with chain A- Hydrophobic interactions: A:I.46, A:V.49, A:A.50, A:P.71, A:P.71, A:I.74, A:I.77, A:L.78, A:L.78, A:F.113, A:F.113
- Hydrogen bonds: A:G.59
L2P.21: 8 residues within 4Å:- Chain A: A.131, F.134, L.135, V.168, P.175, F.176, L.179
- Ligands: LFA.15
4 PLIP interactions:4 interactions with chain A- Hydrophobic interactions: A:F.134, A:F.134, A:V.168, A:F.176
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Gushchin, I. et al., Active State of Sensory Rhodopsin II: Structural Determinants for Signal Transfer and Proton Pumping. J.Mol.Biol. (2011)
- Release Date
- 2011-09-14
- Peptides
- Sensory rhodopsin-2: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A - Membrane
-
We predict this structure to be a membrane protein.
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.50 Å
- Oligo State
- monomer
- Ligands
- 1 x RET: RETINAL(Covalent)
- 1 x BOG: octyl beta-D-glucopyranoside(Non-covalent)
- 29 x LFA: EICOSANE(Non-covalent)(Non-functional Binders)
- 2 x L2P: 2,3-DI-PHYTANYL-GLYCEROL(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Gushchin, I. et al., Active State of Sensory Rhodopsin II: Structural Determinants for Signal Transfer and Proton Pumping. J.Mol.Biol. (2011)
- Release Date
- 2011-09-14
- Peptides
- Sensory rhodopsin-2: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A - Membrane
-
We predict this structure to be a membrane protein.