SMTL ID : 3qec.2 (1 other biounit)

Crystal structure of a putative carbohydrate binding protein (PA1324) from Pseudomonas aeruginosa at 2.61 A resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.61 Å

Oligo State

homo-trimer

Ligands

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 11 residues within 4Å: Chain A: S.139, G.140 Chain B: S.139, G.140 Chain C: S.139, G.140 Ligands: GOL.2, SO4.7, GOL.8, SO4.13, GOL.14 3 PLIP interactions: 1 interactions with chain C, 1 interactions with chain A, 1 interactions with chain B Hydrogen bonds: C:G.140, A:G.140, B:G.140 SO4.7: 11 residues within 4Å: Chain A: S.139, G.140 Chain B: S.139, G.140 Chain C: S.139, G.140 Ligands: SO4.1, GOL.2, GOL.8, SO4.13, GOL.14 3 PLIP interactions: 1 interactions with chain C, 1 interactions with chain A, 1 interactions with chain B Hydrogen bonds: C:G.140, A:G.140, B:G.140 SO4.13: 11 residues within 4Å: Chain A: S.139, G.140 Chain B: S.139, G.140 Chain C: S.139, G.140 Ligands: SO4.1, GOL.2, SO4.7, GOL.8, GOL.14 3 PLIP interactions: 1 interactions with chain C, 1 interactions with chain A, 1 interactions with chain B Hydrogen bonds: C:G.140, A:G.140, B:G.140

6 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 9 residues within 4Å: Chain A: Q.142 Chain C: G.140, S.141, Q.142 Ligands: SO4.1, SO4.7, GOL.8, SO4.13, GOL.14 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:S.141, C:Q.142, C:Q.142, C:Q.142 GOL.3: 6 residues within 4Å: Chain A: L.32, T.33, D.67, E.128, G.129, R.150 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:T.33, A:D.67, A:E.128, A:G.129, A:R.150, A:R.150, A:R.150 GOL.8: 9 residues within 4Å: Chain A: G.140, S.141, Q.142 Chain B: Q.142 Ligands: SO4.1, GOL.2, SO4.7, SO4.13, GOL.14 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.141, A:Q.142, A:Q.142, A:Q.142 GOL.9: 6 residues within 4Å: Chain B: L.32, T.33, D.67, E.128, G.129, R.150 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:T.33, B:D.67, B:E.128, B:G.129, B:R.150, B:R.150, B:R.150 GOL.14: 9 residues within 4Å: Chain B: G.140, S.141, Q.142 Chain C: Q.142 Ligands: SO4.1, GOL.2, SO4.7, GOL.8, SO4.13 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:S.141, B:Q.142, B:Q.142, B:Q.142 GOL.15: 6 residues within 4Å: Chain C: L.32, T.33, D.67, E.128, G.129, R.150 8 PLIP interactions: 8 interactions with chain C Hydrogen bonds: C:T.33, C:D.67, C:E.128, C:E.128, C:G.129, C:R.150, C:R.150, C:R.150

6 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.4: 5 residues within 4Å: Chain A: E.90, A.91, T.92, F.99, D.100 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:E.90, A:T.92, A:T.92, A:D.100, A:D.100 Water bridges: A:D.100 PEG.5: 5 residues within 4Å: Chain A: T.43, T.45, E.114, L.115, T.116 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.43, A:T.116 PEG.10: 5 residues within 4Å: Chain B: E.90, A.91, T.92, F.99, D.100 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:E.90, B:T.92, B:T.92, B:D.100, B:D.100 Water bridges: B:D.100 PEG.11: 5 residues within 4Å: Chain B: T.43, T.45, E.114, L.115, T.116 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:T.43, B:T.116 PEG.16: 5 residues within 4Å: Chain C: E.90, A.91, T.92, F.99, D.100 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:E.90, C:T.92, C:D.100, C:D.100 PEG.17: 5 residues within 4Å: Chain C: T.43, T.45, E.114, L.115, T.116 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:T.43, C:T.116

3 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.6: 9 residues within 4Å: Chain A: A.52, T.53, S.54, K.57, T.108, Y.110, L.135 Ligands: PGE.12, PGE.18 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.57 PGE.12: 9 residues within 4Å: Chain B: A.52, T.53, S.54, K.57, T.108, Y.110, L.135 Ligands: PGE.6, PGE.18 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:K.57 PGE.18: 9 residues within 4Å: Chain C: A.52, T.53, S.54, K.57, T.108, Y.110, L.135 Ligands: PGE.6, PGE.12 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:K.57

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of a putative carbohydrate binding protein (PA1324) from Pseudomonas aeruginosa at 2.61 A resolution. To be published

Release Date

2011-03-02

Peptides

Putative carbohydrate binding protein: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

Putative carbohydrate binding protein

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