SMTL ID : 3qg7.1

Structural Basis for Ligand Recognition and Discrimination of a Quorum Quenching Antibody

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.78 Å

Oligo State

hetero-1-1-mer

Ligands

3 x P6G: HEXAETHYLENE GLYCOL(Non-functional Binders)

P6G.1: 4 residues within 4Å: Chain A: T.58, Y.60, F.68, S.69 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.58, A:F.68 P6G.2: 6 residues within 4Å: Chain A: D.1, V.2, Y.27, N.32, Y.33, R.98 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:D.1, A:N.32, A:Y.33, A:R.98, A:R.98 P6G.3: 10 residues within 4Å: Chain A: N.36, I.38, E.99, G.100, D.101 Chain B: H.39, F.41, L.51, S.94, T.96 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.36, A:G.100

1 x NA: SODIUM ION(Non-functional Binders)

NA.4: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kirchdoerfer, R.N. et al., Structural Basis for Ligand Recognition and Discrimination of a Quorum-quenching Antibody. J.Biol.Chem. (2011)

Release Date

2011-03-23

Peptides

AP4-24H11 Antibody Heavy Chain: A
AP4-24H11 Antibody Light Chain: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
H

B
L

AP4-24H11 Antibody Heavy Chain

AP4-24H11 Antibody Light Chain

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