SMTL ID : 3qj9.1

Crystal structure of fatty acid amide hydrolase with small molecule inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-dimer

Ligands

2 x QJ9: 1-{(3S)-1-[4-(1-benzofuran-2-yl)pyrimidin-2-yl]piperidin-3-yl}-3-ethyl-1,3-dihydro-2H-benzimidazol-2-one(Non-covalent)

QJ9.1: 19 residues within 4Å: Chain A: M.199, L.200, S.201, F.202, I.246, G.247, G.248, S.249, F.389, L.409, L.412, I.415, L.437, F.440, M.444, G.493, T.496, I.499, W.539 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:L.200, A:L.200, A:I.246, A:F.389, A:L.437, A:F.440, A:T.496, A:I.499 Hydrogen bonds: A:T.496 Water bridges: A:F.202 pi-Stacking: A:W.539, A:W.539 QJ9.13: 21 residues within 4Å: Chain B: M.199, L.200, S.201, F.202, I.246, G.247, G.248, S.249, L.388, F.389, L.409, L.412, I.415, L.437, F.440, M.444, G.493, T.496, I.499, W.539 Ligands: EDO.17 9 PLIP interactions: 9 interactions with chain B Hydrophobic interactions: B:L.200, B:I.246, B:L.388, B:L.437, B:L.437, B:F.440, B:T.496, B:I.499 pi-Stacking: B:W.539

21 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 8 residues within 4Å: Chain A: E.296, A.299, L.300, K.303, F.322, E.324, Y.327, R.328 Ligand excluded by PLIP EDO.3: 3 residues within 4Å: Chain A: R.42, F.404, V.405 Ligand excluded by PLIP EDO.5: 3 residues within 4Å: Chain A: N.116, K.117, N.120 Ligand excluded by PLIP EDO.6: 2 residues within 4Å: Chain A: K.454, H.457 Ligand excluded by PLIP EDO.7: 3 residues within 4Å: Chain A: Y.337, E.339, K.358 Ligand excluded by PLIP EDO.8: 7 residues within 4Å: Chain A: A.283, V.284, Q.285, I.459, N.506, C.507, D.509 Ligand excluded by PLIP EDO.9: 3 residues within 4Å: Chain A: R.46, G.47, T.50 Ligand excluded by PLIP EDO.10: 3 residues within 4Å: Chain A: Q.54, K.55, A.58 Ligand excluded by PLIP EDO.12: 4 residues within 4Å: Chain A: V.517, T.518, T.519, T.581 Ligand excluded by PLIP EDO.14: 7 residues within 4Å: Chain B: A.52, K.55, Q.56, S.59, T.123, S.124, F.209 Ligand excluded by PLIP EDO.15: 8 residues within 4Å: Chain B: Y.338, D.341, I.376, T.480, S.500, Y.501, L.504, Y.505 Ligand excluded by PLIP EDO.17: 6 residues within 4Å: Chain B: S.201, F.202, C.408, P.492, G.493 Ligands: QJ9.13 Ligand excluded by PLIP EDO.18: 4 residues within 4Å: Chain B: T.84, L.85, P.86, Q.89 Ligand excluded by PLIP EDO.19: 4 residues within 4Å: Chain B: V.517, T.518, T.519, T.581 Ligand excluded by PLIP EDO.20: 1 residues within 4Å: Chain B: R.351 Ligand excluded by PLIP EDO.21: 4 residues within 4Å: Chain B: P.86, L.88, Q.89, E.296 Ligand excluded by PLIP EDO.22: 2 residues within 4Å: Chain B: R.53, F.404 Ligand excluded by PLIP EDO.23: 4 residues within 4Å: Chain B: R.352, T.521, E.523, D.524 Ligand excluded by PLIP EDO.24: 2 residues within 4Å: Chain B: N.375, Y.378 Ligand excluded by PLIP EDO.25: 3 residues within 4Å: Chain B: R.360, A.363, L.579 Ligand excluded by PLIP EDO.26: 4 residues within 4Å: Chain B: M.199, I.246, G.276, L.286 Ligand excluded by PLIP

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 4 residues within 4Å: Chain A: R.445, P.446, R.447, K.451 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.442, A:R.445, A:K.451 Water bridges: A:R.445 GOL.16: 6 residues within 4Å: Chain B: L.88, E.296, L.300, K.303, E.324, R.328 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:E.296, B:E.296, B:K.303, B:E.324, B:R.328

1 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.11: 8 residues within 4Å: Chain A: L.83, T.84, G.234, G.236, G.258, I.259, R.293, K.584 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.84, A:R.293 Water bridges: A:R.293, A:K.584

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Min, X. et al., Discovery and molecular basis of potent noncovalent inhibitors of fatty acid amide hydrolase (FAAH). Proc.Natl.Acad.Sci.USA (2011)

Release Date

2011-04-27

Peptides

Fatty-acid amide hydrolase 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Fatty-acid amide hydrolase 1

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