SMTL ID : 3qk3.1

Crystal structure of human beta-crystallin B3

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

homo-trimer

Ligands

5 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: R.60, D.170 Chain B: R.60 Chain C: R.60 5 PLIP interactions: 1 interactions with chain B, 2 interactions with chain C, 2 interactions with chain A Salt bridges: B:R.60, C:R.60, A:R.60 Water bridges: C:R.60 Hydrogen bonds: A:D.170 SO4.2: 4 residues within 4Å: Chain A: S.96, N.140, G.141, R.160 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:S.96, A:S.96, A:N.140, A:G.141 Water bridges: A:T.142 Salt bridges: A:R.160 SO4.3: 5 residues within 4Å: Chain A: R.57, L.87 Chain C: R.90, N.93, E.159 6 PLIP interactions: 5 interactions with chain C, 1 interactions with chain A Water bridges: C:R.90, C:R.90, C:R.90, C:N.93 Salt bridges: C:R.90, A:R.57 SO4.8: 4 residues within 4Å: Chain A: R.160 Chain B: E.17, W.74, D.84 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.160 SO4.10: 6 residues within 4Å: Chain A: F.59, R.90 Chain B: S.56, R.57, R.60, L.87 7 PLIP interactions: 6 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:R.57, B:R.57 Water bridges: B:R.60, B:R.60 Salt bridges: B:R.57, B:R.60, A:R.90

5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 2 residues within 4Å: Chain A: K.22, R.23 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.23 EDO.5: 3 residues within 4Å: Chain B: R.132, W.166 Ligands: EDO.6 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.132, B:R.132 EDO.6: 4 residues within 4Å: Chain B: W.166, Q.173, P.174 Ligands: EDO.5 3 PLIP interactions: 1 interactions with chain A, 2 interactions with chain B Water bridges: A:H.165, B:R.132 Hydrogen bonds: B:Q.173 EDO.7: 1 residues within 4Å: Chain B: W.125 No protein-ligand interaction detected (PLIP) EDO.9: 4 residues within 4Å: Chain B: S.96, N.140, G.141, R.160 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:S.96, B:N.140, B:G.141 Water bridges: B:T.142, B:T.142

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

 - 

Release Date

2011-02-23

Peptides

Beta-crystallin B3: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Beta-crystallin B3