SMTL ID : 3qlt.1

Crystal structure of a GluK2 (GluR6) glycan wedge homodimer assembly

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.99 Å

Oligo State

homo-dimer

Ligands

6 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 2 residues within 4Å: Chain A: K.181, N.213 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.181, A:N.213 NAG.2: 5 residues within 4Å: Chain A: N.347, T.349, N.350, T.354, D.355 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.347, A:T.349, A:N.350, A:T.354 NAG.3: 2 residues within 4Å: Chain B: K.181, N.213 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:K.181 NAG.4: 7 residues within 4Å: Chain B: W.138, H.194, E.219, Y.220, Y.221, H.222, N.244 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:H.222 Hydrogen bonds: B:E.219 NAG.5: 4 residues within 4Å: Chain B: N.347, T.349, N.350, T.354 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:N.347, B:N.350, B:N.350 NAG.6: 2 residues within 4Å: Chain B: S.378, N.381 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.381

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kumar, J. et al., Structure and assembly mechanism for heteromeric kainate receptors. Neuron (2011)

Release Date

2011-08-03

Peptides

Glutamate receptor, ionotropic kainate 2: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Glutamate receptor, ionotropic kainate 2

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