SMTL ID : 3qm1.1 (1 other biounit)

CRYSTAL STRUCTURE OF THE LACTOBACILLUS JOHNSONII CINNAMOYL ESTERASE LJ0536 S106A MUTANT IN COMPLEX WITH ETHYLFERULATE, Form II

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.82 Å

Oligo State

homo-dimer

Ligands

2 x ZYC: ethyl (2E)-3-(4-hydroxy-3-methoxyphenyl)prop-2-enoate(Non-covalent)

ZYC.1: 14 residues within 4Å: Chain A: G.54, F.55, A.57, H.126, A.127, Q.128, A.153, L.156, D.159, T.165, Q.166, Y.190, H.246 Ligands: NA.23 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:F.55, A:A.57, A:A.153, A:L.156 Hydrogen bonds: A:F.55, A:Q.128, A:D.159, A:Y.190 Water bridges: A:Q.166 Salt bridges: A:H.126, A:H.246 ZYC.63: 14 residues within 4Å: Chain B: G.54, F.55, A.57, H.126, A.127, Q.128, A.153, L.156, D.159, T.165, Q.166, Y.190, H.246 Ligands: NA.85 11 PLIP interactions: 11 interactions with chain B Hydrophobic interactions: B:F.55, B:A.57, B:A.153, B:L.156 Hydrogen bonds: B:F.55, B:Q.128, B:D.159, B:D.159 Water bridges: B:Q.166 Salt bridges: B:H.126, B:H.246

84 x NA: SODIUM ION(Non-functional Binders)

NA.2: 3 residues within 4Å: Chain A: K.92, F.93, E.94 Ligand excluded by PLIP NA.3: 1 residues within 4Å: Chain A: D.30 Ligand excluded by PLIP NA.4: 3 residues within 4Å: Chain A: L.17, G.43, E.44 Ligand excluded by PLIP NA.5: 2 residues within 4Å: Chain A: Q.166, T.219 Ligand excluded by PLIP NA.6: 1 residues within 4Å: Chain A: Q.196 Ligand excluded by PLIP NA.7: 3 residues within 4Å: Chain A: T.237, L.238, H.239 Ligand excluded by PLIP NA.8: 3 residues within 4Å: Chain A: L.240, I.241, E.242 Ligand excluded by PLIP NA.9: 3 residues within 4Å: Chain A: Q.196 Chain B: P.198, V.202 Ligand excluded by PLIP NA.10: 1 residues within 4Å: Chain A: L.161 Ligand excluded by PLIP NA.11: 5 residues within 4Å: Chain A: Q.33, V.35, D.88, S.89, D.90 Ligand excluded by PLIP NA.12: 5 residues within 4Å: Chain A: P.172, D.173, H.174, I.175, R.192 Ligand excluded by PLIP NA.13: 3 residues within 4Å: Chain A: F.19, Q.20 Ligands: CL.60 Ligand excluded by PLIP NA.14: 3 residues within 4Å: Chain A: P.176, R.178, P.180 Ligand excluded by PLIP NA.15: 3 residues within 4Å: Chain A: K.227, D.230, Q.231 Ligand excluded by PLIP NA.16: 1 residues within 4Å: Chain A: K.254 Ligand excluded by PLIP NA.17: 3 residues within 4Å: Chain A: M.22, A.23, T.24 Ligand excluded by PLIP NA.18: 1 residues within 4Å: Chain A: N.120 Ligand excluded by PLIP NA.19: 2 residues within 4Å: Chain A: T.155, G.158 Ligand excluded by PLIP NA.20: 7 residues within 4Å: Chain A: K.157, L.197, P.198, I.199, Y.200, E.201 Ligands: CL.59 Ligand excluded by PLIP NA.21: 1 residues within 4Å: Chain A: T.24 Ligand excluded by PLIP NA.22: 1 residues within 4Å: Chain A: G.91 Ligand excluded by PLIP NA.23: 4 residues within 4Å: Chain A: A.57, H.126, C.247 Ligands: ZYC.1 Ligand excluded by PLIP NA.24: 2 residues within 4Å: Ligands: CL.58, CL.120 Ligand excluded by PLIP NA.25: 1 residues within 4Å: Ligands: CL.61 Ligand excluded by PLIP NA.26: 3 residues within 4Å: Chain A: G.87, S.89 Ligands: CL.57 Ligand excluded by PLIP NA.27: 4 residues within 4Å: Chain A: E.162, G.163, T.169, Y.170 Ligand excluded by PLIP NA.28: 4 residues within 4Å: Chain A: S.249, D.250, S.251, Y.252 Ligand excluded by PLIP NA.29: 3 residues within 4Å: Chain A: K.227, L.238, L.240 Ligand excluded by PLIP NA.30: 2 residues within 4Å: Chain A: Q.20, R.72 Ligand excluded by PLIP NA.31: 3 residues within 4Å: Chain A: K.157 Ligands: CL.56, CL.59 Ligand excluded by PLIP NA.32: 6 residues within 4Å: Chain A: N.84, G.85, G.91, K.92, N.95, M.96 Ligand excluded by PLIP NA.33: 4 residues within 4Å: Chain A: C.211, T.237, H.239, F.263 Ligand excluded by PLIP NA.34: 2 residues within 4Å: Chain A: G.31 Ligands: CL.55 Ligand excluded by PLIP NA.35: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP NA.36: 3 residues within 4Å: Chain A: D.217, G.243, Y.252 Ligand excluded by PLIP NA.37: 1 residues within 4Å: Chain A: L.238 Ligand excluded by PLIP NA.38: 3 residues within 4Å: Chain A: D.230, Y.233, S.236 Ligand excluded by PLIP NA.39: 2 residues within 4Å: Chain A: T.219, V.220 Ligand excluded by PLIP NA.40: 5 residues within 4Å: Chain A: D.217, D.218, T.219, D.245, H.246 Ligand excluded by PLIP NA.41: 1 residues within 4Å: Chain A: D.230 Ligand excluded by PLIP NA.42: 3 residues within 4Å: Chain A: K.254, V.257 Ligands: CL.54 Ligand excluded by PLIP NA.43: 3 residues within 4Å: Chain A: G.167, V.168, T.169 Ligand excluded by PLIP NA.64: 3 residues within 4Å: Chain B: K.92, F.93, E.94 Ligand excluded by PLIP NA.65: 1 residues within 4Å: Chain B: D.30 Ligand excluded by PLIP NA.66: 3 residues within 4Å: Chain B: L.17, G.43, E.44 Ligand excluded by PLIP NA.67: 2 residues within 4Å: Chain B: Q.166, T.219 Ligand excluded by PLIP NA.68: 1 residues within 4Å: Chain B: Q.196 Ligand excluded by PLIP NA.69: 3 residues within 4Å: Chain B: T.237, L.238, H.239 Ligand excluded by PLIP NA.70: 3 residues within 4Å: Chain B: L.240, I.241, E.242 Ligand excluded by PLIP NA.71: 3 residues within 4Å: Chain A: P.198, V.202 Chain B: Q.196 Ligand excluded by PLIP NA.72: 1 residues within 4Å: Chain B: L.161 Ligand excluded by PLIP NA.73: 5 residues within 4Å: Chain B: Q.33, V.35, D.88, S.89, D.90 Ligand excluded by PLIP NA.74: 5 residues within 4Å: Chain B: P.172, D.173, H.174, I.175, R.192 Ligand excluded by PLIP NA.75: 3 residues within 4Å: Chain B: F.19, Q.20 Ligands: CL.122 Ligand excluded by PLIP NA.76: 3 residues within 4Å: Chain B: P.176, R.178, P.180 Ligand excluded by PLIP NA.77: 3 residues within 4Å: Chain B: K.227, D.230, Q.231 Ligand excluded by PLIP NA.78: 1 residues within 4Å: Chain B: K.254 Ligand excluded by PLIP NA.79: 3 residues within 4Å: Chain B: M.22, A.23, T.24 Ligand excluded by PLIP NA.80: 1 residues within 4Å: Chain B: N.120 Ligand excluded by PLIP NA.81: 2 residues within 4Å: Chain B: T.155, G.158 Ligand excluded by PLIP NA.82: 7 residues within 4Å: Chain B: K.157, L.197, P.198, I.199, Y.200, E.201 Ligands: CL.121 Ligand excluded by PLIP NA.83: 1 residues within 4Å: Chain B: T.24 Ligand excluded by PLIP NA.84: 1 residues within 4Å: Chain B: G.91 Ligand excluded by PLIP NA.85: 4 residues within 4Å: Chain B: A.57, H.126, C.247 Ligands: ZYC.63 Ligand excluded by PLIP NA.86: 2 residues within 4Å: Ligands: CL.58, CL.120 Ligand excluded by PLIP NA.87: 1 residues within 4Å: Ligands: CL.123 Ligand excluded by PLIP NA.88: 3 residues within 4Å: Chain B: G.87, S.89 Ligands: CL.119 Ligand excluded by PLIP NA.89: 4 residues within 4Å: Chain B: E.162, G.163, T.169, Y.170 Ligand excluded by PLIP NA.90: 4 residues within 4Å: Chain B: S.249, D.250, S.251, Y.252 Ligand excluded by PLIP NA.91: 3 residues within 4Å: Chain B: K.227, L.238, L.240 Ligand excluded by PLIP NA.92: 2 residues within 4Å: Chain B: Q.20, R.72 Ligand excluded by PLIP NA.93: 3 residues within 4Å: Chain B: K.157 Ligands: CL.118, CL.121 Ligand excluded by PLIP NA.94: 6 residues within 4Å: Chain B: N.84, G.85, G.91, K.92, N.95, M.96 Ligand excluded by PLIP NA.95: 4 residues within 4Å: Chain B: C.211, T.237, H.239, F.263 Ligand excluded by PLIP NA.96: 2 residues within 4Å: Chain B: G.31 Ligands: CL.117 Ligand excluded by PLIP NA.97: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP NA.98: 3 residues within 4Å: Chain B: D.217, G.243, Y.252 Ligand excluded by PLIP NA.99: 1 residues within 4Å: Chain B: L.238 Ligand excluded by PLIP NA.100: 3 residues within 4Å: Chain B: D.230, Y.233, S.236 Ligand excluded by PLIP NA.101: 2 residues within 4Å: Chain B: T.219, V.220 Ligand excluded by PLIP NA.102: 5 residues within 4Å: Chain B: D.217, D.218, T.219, D.245, H.246 Ligand excluded by PLIP NA.103: 1 residues within 4Å: Chain B: D.230 Ligand excluded by PLIP NA.104: 3 residues within 4Å: Chain B: K.254, V.257 Ligands: CL.116 Ligand excluded by PLIP NA.105: 3 residues within 4Å: Chain B: G.167, V.168, T.169 Ligand excluded by PLIP

38 x CL: CHLORIDE ION(Non-functional Binders)

CL.44: 2 residues within 4Å: Chain A: H.174, P.176 Ligand excluded by PLIP CL.45: 1 residues within 4Å: Chain A: E.201 Ligand excluded by PLIP CL.46: 2 residues within 4Å: Chain A: R.65 Ligands: CL.53 Ligand excluded by PLIP CL.47: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.48: 6 residues within 4Å: Chain A: S.134, A.137, G.138, S.203, F.206, Y.233 Ligand excluded by PLIP CL.49: 2 residues within 4Å: Chain A: T.216, K.227 Ligand excluded by PLIP CL.50: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.51: 1 residues within 4Å: Chain A: R.119 Ligand excluded by PLIP CL.52: 2 residues within 4Å: Chain A: I.25, T.26 Ligand excluded by PLIP CL.53: 3 residues within 4Å: Chain A: R.65, N.69 Ligands: CL.46 Ligand excluded by PLIP CL.54: 5 residues within 4Å: Chain A: E.66, Q.253, K.254, V.257 Ligands: NA.42 Ligand excluded by PLIP CL.55: 1 residues within 4Å: Ligands: NA.34 Ligand excluded by PLIP CL.56: 3 residues within 4Å: Chain A: Y.200, K.228 Ligands: NA.31 Ligand excluded by PLIP CL.57: 3 residues within 4Å: Chain A: S.89, G.91 Ligands: NA.26 Ligand excluded by PLIP CL.58: 5 residues within 4Å: Chain A: P.198 Chain B: P.198 Ligands: NA.24, NA.86, CL.120 Ligand excluded by PLIP CL.59: 3 residues within 4Å: Chain A: K.157 Ligands: NA.20, NA.31 Ligand excluded by PLIP CL.60: 3 residues within 4Å: Chain A: G.21, M.22 Ligands: NA.13 Ligand excluded by PLIP CL.61: 1 residues within 4Å: Ligands: NA.25 Ligand excluded by PLIP CL.62: 3 residues within 4Å: Chain A: N.16, L.17, H.117 Ligand excluded by PLIP CL.106: 2 residues within 4Å: Chain B: H.174, P.176 Ligand excluded by PLIP CL.107: 1 residues within 4Å: Chain B: E.201 Ligand excluded by PLIP CL.108: 2 residues within 4Å: Chain B: R.65 Ligands: CL.115 Ligand excluded by PLIP CL.109: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.110: 6 residues within 4Å: Chain B: S.134, A.137, G.138, S.203, F.206, Y.233 Ligand excluded by PLIP CL.111: 2 residues within 4Å: Chain B: T.216, K.227 Ligand excluded by PLIP CL.112: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.113: 1 residues within 4Å: Chain B: R.119 Ligand excluded by PLIP CL.114: 2 residues within 4Å: Chain B: I.25, T.26 Ligand excluded by PLIP CL.115: 3 residues within 4Å: Chain B: R.65, N.69 Ligands: CL.108 Ligand excluded by PLIP CL.116: 5 residues within 4Å: Chain B: E.66, Q.253, K.254, V.257 Ligands: NA.104 Ligand excluded by PLIP CL.117: 1 residues within 4Å: Ligands: NA.96 Ligand excluded by PLIP CL.118: 3 residues within 4Å: Chain B: Y.200, K.228 Ligands: NA.93 Ligand excluded by PLIP CL.119: 3 residues within 4Å: Chain B: S.89, G.91 Ligands: NA.88 Ligand excluded by PLIP CL.120: 5 residues within 4Å: Chain A: P.198 Chain B: P.198 Ligands: NA.24, CL.58, NA.86 Ligand excluded by PLIP CL.121: 3 residues within 4Å: Chain B: K.157 Ligands: NA.82, NA.93 Ligand excluded by PLIP CL.122: 3 residues within 4Å: Chain B: G.21, M.22 Ligands: NA.75 Ligand excluded by PLIP CL.123: 1 residues within 4Å: Ligands: NA.87 Ligand excluded by PLIP CL.124: 3 residues within 4Å: Chain B: N.16, L.17, H.117 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lai, K.K. et al., An Inserted alpha/beta Subdomain Shapes the Catalytic Pocket of Lactobacillus johnsonii Cinnamoyl Esterase. Plos One (2011)

Release Date

2011-08-31

Peptides

Cinnamoyl esterase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Cinnamoyl esterase

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