SMTL ID : 3qnw.2 (1 other biounit)

Caspase-6 in complex with Z-VAD-FMK inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.65 Å

Oligo State

hetero-3-2-mer

Ligands

1 x PHQ- VAL- ALA- ASP- CF0: Z-VAD-FMK(Non-covalent)

PHQ-VAL-ALA-ASP-CF0.1: 13 residues within 4Å: Chain D: E.100, C.140 Chain E: E.21, G.22, Y.23, Y.24, S.25, H.26, W.34, V.68, K.79, K.80, Q.81 10 PLIP interactions: 9 interactions with chain E, 1 interactions with chain D Hydrophobic interactions: E:Y.24, E:Y.24, E:W.34, E:V.68, D:E.100 Hydrogen bonds: E:G.22, E:Y.23, E:S.25, E:S.25 pi-Stacking: E:H.26

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Muller, I. et al., Structure of human caspase-6 in complex with Z-VAD-FMK: New peptide binding mode observed for the non-canonical caspase conformation. Bioorg.Med.Chem.Lett. (2011)

Release Date

2011-09-21

Peptides

Caspase-6: ABD
Caspase-6: CE

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
E

D
G

C
F

E
H

Caspase-6

Caspase-6

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