SMTL ID : 3qpm.1

Crystal structure of peroxiredoxin Prx4 from Pseudosciaena crocea

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-10-mer

Ligands

10 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 4 residues within 4Å: Chain A: K.232 Chain B: F.89, Q.135 Chain D: I.130 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:Q.135, A:K.232 GOL.2: 4 residues within 4Å: Chain A: F.89, Q.135 Chain B: K.232 Chain F: I.130 3 PLIP interactions: 1 interactions with chain B, 1 interactions with chain F, 1 interactions with chain A Hydrogen bonds: B:K.232, A:Q.135 Water bridges: F:A.127 GOL.3: 3 residues within 4Å: Chain C: K.232 Chain D: F.89, Q.135 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:K.232 GOL.4: 3 residues within 4Å: Chain C: F.89, Q.135 Chain D: K.232 3 PLIP interactions: 1 interactions with chain C, 1 interactions with chain D, 1 interactions with chain E Hydrogen bonds: C:Q.135, D:K.232 Water bridges: E:A.127 GOL.5: 4 residues within 4Å: Chain E: K.232 Chain H: I.130 Chain J: F.89, Q.135 2 PLIP interactions: 1 interactions with chain E, 1 interactions with chain J Hydrogen bonds: E:K.232, J:Q.135 GOL.6: 4 residues within 4Å: Chain F: K.232 Chain G: F.89, Q.135 Chain I: I.130 2 PLIP interactions: 1 interactions with chain G, 1 interactions with chain F Hydrogen bonds: G:Q.135, F:K.232 GOL.7: 4 residues within 4Å: Chain A: I.130 Chain F: F.89, Q.135 Chain G: K.232 3 PLIP interactions: 1 interactions with chain F, 1 interactions with chain G, 1 interactions with chain A Hydrogen bonds: F:Q.135, G:K.232 Water bridges: A:A.127 GOL.8: 3 residues within 4Å: Chain H: K.232 Chain I: F.89, Q.135 1 PLIP interactions: 1 interactions with chain H Hydrogen bonds: H:K.232 GOL.9: 3 residues within 4Å: Chain H: F.89, Q.135 Chain I: K.232 3 PLIP interactions: 1 interactions with chain J, 1 interactions with chain H, 1 interactions with chain I Water bridges: J:A.127 Hydrogen bonds: H:Q.135, I:K.232 GOL.10: 4 residues within 4Å: Chain C: I.130 Chain E: F.89, Q.135 Chain J: K.232 2 PLIP interactions: 1 interactions with chain E, 1 interactions with chain J Hydrogen bonds: E:Q.135, J:K.232

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lian, F.M. et al., The N-terminal beta-sheet of peroxiredoxin Prx4 in the large yellow croaker Pseudosciaena crocea is critical for its peroxidase and anti-bacterial activities. To be Published

Release Date

2012-02-22

Peptides

Peroxiredoxin: ABCDEFGHIJ

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
A

G
B

H
C

I
D

J
E

Peroxiredoxin