SMTL ID : 3qpq.3 (3 other biounits)

Crystal structure of ANTI-TLR3 antibody C1068 FAB

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

hetero-1-1-mer

Ligands

7 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 7 residues within 4Å: Chain A: Y.49, A.55, D.56 Chain B: G.100, V.101, M.102, T.105 4 PLIP interactions: 3 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:V.101, B:M.102, B:M.102, A:D.56 GOL.2: 11 residues within 4Å: Chain A: P.121, D.123, L.126, Y.187, N.211, R.212, G.213, E.214, C.215 Chain B: H.222 Ligands: GOL.5 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:D.123, A:Y.187, A:Y.187, A:N.211, A:G.213, A:E.214, A:C.215 GOL.3: 1 residues within 4Å: Chain A: K.189 No protein-ligand interaction detected (PLIP) GOL.4: 3 residues within 4Å: Chain A: E.66, S.67, G.68 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:E.66, A:G.68 Water bridges: A:K.52, A:E.66, A:E.66 GOL.5: 6 residues within 4Å: Chain A: L.126, Y.187, E.188, R.212, G.213 Ligands: GOL.2 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.188, A:R.212, A:G.213 GOL.6: 5 residues within 4Å: Chain A: T.165, E.166 Chain B: T.171, P.173 Ligands: GOL.7 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:T.171, A:E.166 GOL.7: 6 residues within 4Å: Chain A: T.165, E.166, D.168 Chain B: V.169, H.170 Ligands: GOL.6 3 PLIP interactions: 1 interactions with chain B, 2 interactions with chain A Water bridges: B:T.171, A:D.168 Hydrogen bonds: A:E.166

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Luo, J. et al., Crystal structure of Fab C1068. To be Published

Release Date

2011-08-10

Peptides

C1068 light chain: A
C1068 heavy chain: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

C1068 light chain

C1068 heavy chain

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