SMTL ID : 3qq0.1

Crystal structure of a deletion mutant (N59) of 3-deoxy-D-manno-octulosonate 8-phosphate synthase (KDO8PS) from Neisseria meningitidis

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-tetramer

Ligands

4 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 4 residues within 4Å: Chain B: A.112, P.136, Q.137, R.164 Ligand excluded by PLIP CL.4: 3 residues within 4Å: Chain C: A.112, Q.137, R.164 Ligand excluded by PLIP CL.5: 6 residues within 4Å: Chain C: K.52, Q.109, K.134, H.198, F.233, E.235 Ligand excluded by PLIP CL.8: 4 residues within 4Å: Chain D: K.52, Q.109, K.134, F.233 Ligand excluded by PLIP

2 x NA: SODIUM ION(Non-functional Binders)

NA.2: 2 residues within 4Å: Chain B: T.127, N.129 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:T.127 NA.3: 0 residues within 4Å: (No contacts) 3 PLIP interactions: 3 interactions with chain B Water bridges: B:A.102, B:E.103, B:N.129

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.6: 5 residues within 4Å: Chain C: N.172, L.173, Q.216 Chain D: D.176, L.178 4 PLIP interactions: 3 interactions with chain C, 1 interactions with chain D Hydrogen bonds: C:N.172, C:Q.216, D:D.176 Water bridges: C:V.175 GOL.7: 4 residues within 4Å: Chain D: A.102, E.103, T.127, N.129 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:A.102, D:N.129 Water bridges: D:Q.99

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Allison, T.M. et al., Targeting the role of a key conserved motif for substrate selection and catalysis by 3-deoxy-D-manno-octulosonate 8-phosphate synthase. Biochemistry (2011)

Release Date

2011-04-13

Peptides

2-dehydro-3-deoxyphosphooctonate aldolase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

2-dehydro-3-deoxyphosphooctonate aldolase