SMTL ID : 3qqc.1

Crystal structure of archaeal Spt4/5 bound to the RNAP clamp domain

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.30 Å

Oligo State

hetero-1-1-1-mer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.161, C.164, C.208, P.209 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:C.161, A:C.164, A:C.208 ZN.2: 5 residues within 4Å: Chain A: C.121, C.124, C.131, P.132, H.134 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.121, A:C.124, A:C.131, A:H.134 ZN.3: 4 residues within 4Å: Chain A: C.8, C.11, C.26, C.29 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.8, A:C.11, A:C.26, A:C.29 ZN.4: 4 residues within 4Å: Chain C: C.6, C.9, C.18, C.21 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.6, C:C.9, C:C.18, C:C.21

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Martinez-Rucobo, F.W. et al., Architecture of the RNA polymerase-Spt4/5 complex and basis of universal transcription processivity. Embo J. (2011)

Release Date

2011-03-23

Peptides

DNA-directed RNA polymerase subunit b, DNA-directed RNA polymerase subunit a', DNA-directed RNA polymerase subunit A'': A
Transcription antitermination protein nusG: B
DNA-directed RNA polymerase, subunit e'': C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
D

C
E

DNA-directed RNA polymerase subunit b, DNA-directed RNA polymerase subunit a', DNA-directed RNA polymerase subunit A''

Transcription antitermination protein nusG

DNA-directed RNA polymerase, subunit e''

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